| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0288 |
|---|
| Symbol | |
|---|
| ID | 3962149 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 290698 |
|---|
| End bp | 291870 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637915121 |
|---|
| Product | extracellular ligand-binding receptor |
|---|
| Protein accession | YP_521574 |
|---|
| Protein GI | 89899103 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAAC GGCAATTCAT TCATGCCATA GCCCTTGCTG TATCTTTACT TGCTGCTAGT
AATTCAATAG CGCAAGGCAA TACTTTTAAA ATTGGCCTGA TTTTGCCCAT GACCGGCCAA
CAGGCCAGCA CCGGCCGCCA GATCGAGGCC GCCGCCAAGC TGTACATGGC GCAAAACGGC
GACACGGTGG CGGGCAAGAA GGTGGGGCTG ATCGTCAAGG ACGACACCAG CATCCCCGAC
GTGACCAAAC GCCTGGCGCA AGACCTGGTG GTGAATGACA AGGTGAACGT GCTGGCCGGC
TTTGGCATCA CGCCCTCGGC CCTGGCCACC GCGCCGATTG CCACGCAGTC CAAAACCCCC
TTGGTGGTGA TGGCCGCCGC CACCAGCAGC ATCACGCAAG CCTCGCCCTA TGTGGTGCGC
ACCAGTTTCA CGCTGGCGCA GGCCGCCGTG GCCATGGGTG ACTGGGCTCC GAAAAACGGT
ATCAAGAAAG TGGTGACCCT GGTCAGCGAT TACGGCCCCG GCATCGACGC TGAAAAATAT
TTCAAGGAGC GCTTCCTGTT CAACGGCGGC CAGGTTCCGG AATCGCTGCG GGTGCCTTTG
CGCAACCCCG ACTTCGCGCC GTTTCTGCAA AAAGTGCGCG ACCTGAAACC TGACGCGCTG
TTTGTGTTTG TGCCATCAGG CGCAGGTGCT GCTGTGATGA AGCAGTTTCT GGAACGCGGC
ATGGACAAGG CCGGCATCAA GCTGATTGGC ACCGGTGACG TGACCGATGA CGATCAGCTC
AACGGCATGG GCGATGGCGC TTTGGGCGTG GTGACCTCGC ACCATTATTC GACCGCCCAC
CCGTCTGCCG TGAACAAGAA GTTTGTCGAA GCCTTTGGCA AAGCCAACCC CGGCCTGCGC
CCCAACTTCA TGGCGGTTGG CGGTTATGAC GGCATGCGTG TGATTTACGA AGCGCTCAAG
GCGACCAAAG GGCAGGGCGG TGGGGACGCC TTGCTGGCGG CCATGAAGGG CCAGATTTTC
GAGAGCCCGC GCGGCCCGAT GTTCATCGAC GCGCAAACCC GCGACGTGGT GCACAACATC
TACCTGCGCA AGGTCGAGAA GAAAGACGGC CAGCTCTACA ACGTGGAATT TGACGTGATC
AAGGATGTGA AAGACCCCGG CAAAGCCAAG TAA
|
|---|
| Protein sequence | MNKRQFIHAI ALAVSLLAAS NSIAQGNTFK IGLILPMTGQ QASTGRQIEA AAKLYMAQNG
DTVAGKKVGL IVKDDTSIPD VTKRLAQDLV VNDKVNVLAG FGITPSALAT APIATQSKTP
LVVMAAATSS ITQASPYVVR TSFTLAQAAV AMGDWAPKNG IKKVVTLVSD YGPGIDAEKY
FKERFLFNGG QVPESLRVPL RNPDFAPFLQ KVRDLKPDAL FVFVPSGAGA AVMKQFLERG
MDKAGIKLIG TGDVTDDDQL NGMGDGALGV VTSHHYSTAH PSAVNKKFVE AFGKANPGLR
PNFMAVGGYD GMRVIYEALK ATKGQGGGDA LLAAMKGQIF ESPRGPMFID AQTRDVVHNI
YLRKVEKKDG QLYNVEFDVI KDVKDPGKAK
|
|---|
| |