Gene Rfer_0269 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_0269 
Symbol 
ID3961171 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp273660 
End bp274793 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content61% 
IMG OID637915104 
Productextracellular ligand-binding receptor 
Protein accessionYP_521557 
Protein GI89899086 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.556277 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAAGCTT TCAAAACCCT CATCGCCACC GCCGCTGCGG CTCTGGTCAC TGGCTCGGCG 
CTGGCCGACA TCACCATCGG CATCAGCCTG CCTTTGAGCG GCCCGGCATC AGGCCTGGGC
ATTCCGATGG GCAACCAGAT CAAGCTCTGG CCTACATCCA TCGCCGGAGA AAAACTCAAG
GTCATCGTGC TGGACGATGC CACCGATCCG ACCAACGGCG TCAAGAACGC CAAACGTTTT
GTGACCGAAG ACAAGGCCGA CATCATCATG GGCTCAGCCG CCACACCGGT GGCCATCCCG
ATGGCCGCCG TGGCCGCTGA AGCCGAAACC GTGCAGATAG CGTTCTCCCC CGCCGTACTG
CCCCCCGGCA AAGATGCCTG GACCTTTCGT CTGCCGCAAT CGAACGATGT GATGGCCCAC
GCCATGGTGG CGTTGATGAA AAAGCAAGGT GTCAAAACCG TGGGCTTTCT GGGCTACACC
GATGCCTATG GCGAAAGCTG GCTCAAGGAG TTCACCGCTC AAGCCAATGC CAACGGCATC
AAGCTGATTG GCACCGAGCG TTTTGCCCGC TCTGACACCA GCGTCACCGC CCAGGCCCTC
AAGCTGGTGG CCGCCAACCC GGACGCCATG TTGATTGTGG CCTCGGGCAG CGGCGCTGCC
ATGCCCCACA TGGCGGTGGT GGATCGTGGC TACAAGGGCA AGATCTACCA GACCCATGCA
GCAGCGTCGC GTGACCTGAT GCGTGTCGGT GGCAAAGCCG TGGAAGGTGC TTATGTGGTG
TCCGGCCCGG CGGTAATTGC CGAGCAGTTG CCCGACAGCC ACCCGTCCAA GAAAGTTGCC
ATCGACTTCG TGCAGCAATA CGAAAAGGCC TATGGCCCGG GGTCACGCAA CCAGTTCGCC
GGCCACAGTT ACGACGCGGT GCTGATACTG GAAAAAGTCG TTCCCGTGGC GCTGAAAAAA
GGCAAACCCG GCACCAAGGA ATTCCGCGCC GCCCTGCGTG ACGCCATGGA AACCATGGGC
CGCACCGTGG TGTCGCATGG CGTGCTGAAC TGGACCCATG ACAACCACTG GGGCTTCACC
AACGAAACCG GTGTGATGCT CAAGGTGGTC AACGGCGACT GGAAGGTCGA GTAA
 
Protein sequence
MKAFKTLIAT AAAALVTGSA LADITIGISL PLSGPASGLG IPMGNQIKLW PTSIAGEKLK 
VIVLDDATDP TNGVKNAKRF VTEDKADIIM GSAATPVAIP MAAVAAEAET VQIAFSPAVL
PPGKDAWTFR LPQSNDVMAH AMVALMKKQG VKTVGFLGYT DAYGESWLKE FTAQANANGI
KLIGTERFAR SDTSVTAQAL KLVAANPDAM LIVASGSGAA MPHMAVVDRG YKGKIYQTHA
AASRDLMRVG GKAVEGAYVV SGPAVIAEQL PDSHPSKKVA IDFVQQYEKA YGPGSRNQFA
GHSYDAVLIL EKVVPVALKK GKPGTKEFRA ALRDAMETMG RTVVSHGVLN WTHDNHWGFT
NETGVMLKVV NGDWKVE