Gene Rfer_0267 details

Gene Information

• Locus tag: Rfer_0267
• ID: 3961169
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodoferax ferrireducens T118
• Kingdom: Bacteria
• Replicon accession: NC_007908
• Strand: -
• Start bp: 270735
• End bp: 272531
• Gene Length: 1797 bp
• Protein Length: 598 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637915102
• Product: ABC transporter related
• Protein accession: YP_521555
• Protein GI: 89899084
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG0411] ABC-type branched-chain amino acid transport systems, ATPase component; [COG4177] ABC-type branched-chain amino acid transport system, permease component

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.59454
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCTTCA CCACACAACT TCAACATTGG GCGCACAACG CCAAAATCCA GCGCGTGGTG 
GTCGTGGCCT GCATGCTGCT GTACGCCGTG TCCCCCGTGC CCGAGTTCTG GATCACCCAG 
CTCAACTACA TCGCACTCTA CAGTCTGGTG ATTCTGGGGC TGGTGCTGCT CACCGGCATC 
GGCGGGCTGA CTTCATTCGG GCAGGCCGCG TTTGTCGGCA TCGGGGCTTA CACCAGCGCG 
TATCTGACGG TTCACATGGG CTGGTCACCC TGGCTCACCG TGTTTGCCGG GCTGTTCATC 
ACCGGCATCA GCGCGCTGGT GGTGGGCTGG ATCACGCTGC GCATGTCGGG CCACTACCTG 
CCGCTGGCCA CCATTGCCTG GGGCTTGTCG CTGTATTACC TGATGGGCAA CCTGGATGCG 
CTGGGCAAGT ACGACGGTAT TCTGGGTGTG CCCGCGCTGA CCGTGTGGGG CTGGGACATC 
AGCCAGGGCC GCAGCTTCTT TGTGCTGGCC TGGGGCATGG TGCTGTTTGC TGCGTTTGCA 
CTGTTGAACC TGATGGATTC ACGCACCGGC CGCGCCATCA AAGCCATGCG CGCCAGCACC 
CTGATGGCCG AGGCCATGGG GGTGGACACG CTGCGCCACA AGGTCGGCAT CTTTTTGATC 
GCGGCCCTGT TTGCCAGTCT CTCGGGCTGG TTGTTTGCGC ACTTTCAGCG CACCGTCAAC 
CCGTCTCCCT TTGGCCTGAA GATGGGTATT GAGTACCTGT TCATGACCGT GCTCGGTGGG 
GCCGGTTATG TGTGGGGTGC CATCAGCGGC GCGGTGATGA CCAAGCTGCT GGAGGACGAA 
CTGCAGGTGC TCCTGCCCAA ATTGCTGGGC ACCAGCGGCA GCTACGAGGT GATTGTGTTT 
GGCATTGTGC TGGTGCTGGT GCTGAAGTAC CTGCCCGATG GCGTGTGGTC GCTGGTGGGG 
CGTTTTCTTC CCAAGCCCAA CCGGGTCGAA GACTGGCACG CTGCTGCTGC CTTGCCTGAG 
CGCGCCAAAC CCGCGCTGGG TGACACCGTG CTGGAGGTGA AAGACATCCG CAAACAGTTT 
GGCGGGCTGA CCGCAGTGAA CAACATCGGG TTTTCCATCC AGGCGGGGCA AATCGTTGGC 
CTGATCGGCC CCAATGGTGC TGGCAAGTCC ACCACCTTCA ACCTGATCAC CGGCGTGCTG 
GGCCTGAGCT CGGGCGAGGT GAAGTTTCGC GGCCAAACCA TCAGCGGCCT GCCTTCGCGC 
GAGATTGCCC GGCGCGGCAT GAGCCGCACC TTCCAGCACG TCAAGATGAT CCCGGAGATG 
ACGGTGCTGG AAAACGTGGC ACTGGGTGCA CAGTTGCGGG GCAGCAAGGG CGCGCTTTCC 
AGCATGTTGC GCCTGGACCG TGCCGAAGAA CAAAGCCTGC TGCGCGAAGC GGCACGTCAG 
CTGGAGCGCA TCGGCATGGG CCATGCGATG CACGAACTGG CCGGCAACCT GGCCATGGGC 
CCGCAGCGCC TGCTGGAAAT TGCCCGCGCC CTGTGCAGCG ACCCAGCCCT GCTGCTGCTG 
GACGAACCCG CCGCCGGTCT GCGCCACAAA GAAAAGCAAG CCCTGGCCGC GGTGTTGCGC 
CAGCTGCGCA GTGAAGGCAT GAGCATTTTG CTGGTGGAGC ACGACATGGA CCTGGTGATG 
GACGTGACCG ACCACATCGT GGTGATGGAG TTTGGCACCC TGCTGATGCA GGGCACGCCC 
GAAGAAGTGC AGCAAAGCCC GAAAGTACGT GCCGCCTACC TTGGCGTGGA GCATTGA 

 

Protein sequence

MSFTTQLQHW AHNAKIQRVV VVACMLLYAV SPVPEFWITQ LNYIALYSLV ILGLVLLTGI 
GGLTSFGQAA FVGIGAYTSA YLTVHMGWSP WLTVFAGLFI TGISALVVGW ITLRMSGHYL 
PLATIAWGLS LYYLMGNLDA LGKYDGILGV PALTVWGWDI SQGRSFFVLA WGMVLFAAFA 
LLNLMDSRTG RAIKAMRAST LMAEAMGVDT LRHKVGIFLI AALFASLSGW LFAHFQRTVN 
PSPFGLKMGI EYLFMTVLGG AGYVWGAISG AVMTKLLEDE LQVLLPKLLG TSGSYEVIVF 
GIVLVLVLKY LPDGVWSLVG RFLPKPNRVE DWHAAAALPE RAKPALGDTV LEVKDIRKQF 
GGLTAVNNIG FSIQAGQIVG LIGPNGAGKS TTFNLITGVL GLSSGEVKFR GQTISGLPSR 
EIARRGMSRT FQHVKMIPEM TVLENVALGA QLRGSKGALS SMLRLDRAEE QSLLREAARQ 
LERIGMGHAM HELAGNLAMG PQRLLEIARA LCSDPALLLL DEPAAGLRHK EKQALAAVLR 
QLRSEGMSIL LVEHDMDLVM DVTDHIVVME FGTLLMQGTP EEVQQSPKVR AAYLGVEH