| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0265 |
|---|
| Symbol | |
|---|
| ID | 3961167 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | - |
|---|
| Start bp | 268733 |
|---|
| End bp | 269854 |
|---|
| Gene Length | 1122 bp |
|---|
| Protein Length | 373 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637915100 |
|---|
| Product | porin |
|---|
| Protein accession | YP_521553 |
|---|
| Protein GI | 89899082 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0179073 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTT CATCACTCAT CACCCTGTCG GGCTTGCTCG CCACGGGCGC GGTGCAAGCG
CAAACCCAAA GCGCCACCCT GTACGGCATG ATCGACACGG GCGTGGAGGC TGTCAGCAAC
GTGTCCGGCG CGGGCACCCT CACCCGCATG CCTTCTACCA CGGGCATTCT TCCATCGCGC
CTGGGCTTTC GTGGCAAGGA AGACCTGGGC GGTGGCTTGA GCGCCGTTTA CACGCTGGAA
ATGGGCTTTG CCCCGGACAC CGGCGCGTCC GGGCAGGGCG GTCGCCTGTT TGGTCGCCAG
TCCACGGTCG GCTTCAGCGG CGATTGGGGT GCCGTCACAC TGGGTCGCCA ATGGACGATG
CTGTTCTGGT CAATTCTGGA CTCCGACATC GTCGGCCCCG CCGTTTATGG ACTGGGCTCA
TTGGACAGCT ACATCCCCAA CTCGCGTATT GACAACTCGC TGGCCTACAA AGGCAAGTTT
GGCAATGTGA CGGTGGGCGG CACCTACAGC CTGGGGCGTG ACACAGTCAA TGCGGGTCCT
TCACCTGCGG GCACCAATTG CGCGGGCGAG AGTGGCGCAG ACACACAGGC GTGCCGCGAA
TGGTCTGCCC TGGTGAAGTA CGACACCGCG AGCTGGGGTG CCGCTGTGGC TTACGACTCC
CTGAACGGAC GCACCCCGGC CAGCGGCACT GACGTGGTGT TGCCAGCGGG CCTGACCAGC
AGCGCCAAAT CCGATGCGCG CTTGATGCTG AACGGCTATG TGAAGTTCTC TGACGTGAAG
CTCGCAGGCG GTGTGATTCG CCGCACCAAC GACGGCAGTG CCACCAAGCC CAAGAGTGAC
CTCTGGTACG TGGGTGCGTC TTACCCGCTG TCACCTGCAT GGACGATTGA CGGAACTTAC
GCCAAACTGA GCTACAAGGA CATTGCCAAT TTCGACTCAT CCCTGCTGGT GGTGAGGTCG
CTTTACAAGA TGTCCAAACG CACCACTTTG TACGTTCAAC TGGGTGGAAT CAGCAATGAC
AGTTTGGCCA ATGTGTCCGT CAGCGGTGGG GCACCCGGTA GCAACCCCGC CTTGGGTGAT
TCACAAACCG GCGTGATGCT GGGTATGAAC CACGCGTTCT AG
|
|---|
| Protein sequence | MKISSLITLS GLLATGAVQA QTQSATLYGM IDTGVEAVSN VSGAGTLTRM PSTTGILPSR
LGFRGKEDLG GGLSAVYTLE MGFAPDTGAS GQGGRLFGRQ STVGFSGDWG AVTLGRQWTM
LFWSILDSDI VGPAVYGLGS LDSYIPNSRI DNSLAYKGKF GNVTVGGTYS LGRDTVNAGP
SPAGTNCAGE SGADTQACRE WSALVKYDTA SWGAAVAYDS LNGRTPASGT DVVLPAGLTS
SAKSDARLML NGYVKFSDVK LAGGVIRRTN DGSATKPKSD LWYVGASYPL SPAWTIDGTY
AKLSYKDIAN FDSSLLVVRS LYKMSKRTTL YVQLGGISND SLANVSVSGG APGSNPALGD
SQTGVMLGMN HAF
|
|---|
| |