| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0259 |
|---|
| Symbol | |
|---|
| ID | 3961161 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodoferax ferrireducens T118 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007908 |
|---|
| Strand | + |
|---|
| Start bp | 257923 |
|---|
| End bp | 259638 |
|---|
| Gene Length | 1716 bp |
|---|
| Protein Length | 571 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 637915094 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_521547 |
|---|
| Protein GI | 89899076 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01905] doubled CXXCH domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTCCTGC TGCTCTGGGC GGGTGCACCC GCTCAATCGG CGAGCATAGT TGCCAACAAG
CACAATCTGT CGGCTACGGG TCCGGGCACG ATCAAGGCCA CATCTGAAGG CGAAGTCTGT
GTGTTTTGCC ACGTGCCACA CAATTCACGG GCCACCGGTC CGCTGTGGAA CCGCGACCAG
CCGGTCGGCT CCTACACGCC CTACACCAGC AGCACACGCA AAATCTCCGC CCCCGGCCAG
CCGACTGGTG CTTCACTCTT GTGCCTGAGC TGCCATGACG GAACCATCGC GCTAGGCAAG
GTCAGCAGCC GCACCGCCAA CATCGCCATA GCTGGCGGCA AAAATAATTT CCTCCTCGGT
GATCAAAGCT ACATCGGCAC TGACTTGTCA GACGACCATC CGGTGTCTTT TCTTTATTCG
AGCGTGCTCA GCAATACAGA GCTGCGCACC CCGACCGGCG CCGTGAAGCT CGACGCCAGC
GGGCAGATGC AGTGCACCTC CTGCCACAGT CCGCACGACA ATGCCAACGG CAAGTTTCTG
GTGGTGAGCA ACATCAAGTC GGGACTGTGC ACCAACTGCC ACAACAAGAG CTACTGGGCG
GCCAGCGATC ACCAGACCTC GACCAAGACC TGGAATGGCG TGGGGACCAA TCCCTGGCTG
CACACAACGA ATACGCCCCA AAACGTCACC AACAACGCCT GCGAGAGCTG CCACCGGCCG
CACACGGCGC CGGGCAGACA GCAACTGCTG AACAGTGCAA CGGAAGAAAC GAATTGCCTG
GTATGCCACA GCGGCACGGT GGCGACATCG GCCAAGAATA TCCAGATTGA GTTGAATAAA
ACTTCCCAAC ACAGCGTGGG CGCCTATCTG AATGTGCACG ATGCGGGCGA AGCCAACTTG
ATGACGACCG CTCACGTCGA ATGCCAGGAC TGCCATAACC CTCATTCTGC CAATAGCACA
GCCGGCTCTG CACCTGGCAC CACGCCGATT GCGTTGCCGG GCTCACTCAG CAACGTGCGC
GGCATCACCA TCAGCGGTGC GGCGGTTAGC CCAGTCACGG CCGAGTACCA GATTTGTTTG
CGCTGCCATG GTGACAGCAC CAGCAGGACG CCGGCATCGC GCACCGCGCG CGTGATCGTG
CAAACCAACA CGCGGCTGGA ATTCGATACT GCCAATCCGT CCTACCATCC GATTGCCGGC
GTTGGTAAGG CGACCGGGGT AACCGGCAAG ACGGTCCCCA GCCTGATTGC GCCCTGGACG
ACAACGAGTG TGATGAATTG CAGCGACTGC CACAACAACA ACGCGGGGCC AAACACCGGG
GGCACTGGTC CCAACGGCCC GCACGGCTCC ACCAATCCAC TGTTGCTGGA GCGTTCCTAC
GTGGTGACCG ATCCGGCGAC AGAAAGCGCC GCTAACTATG CGCTTTGCTA CAAATGCCAC
AGCCGGACCG CCATTATTGG CACTGGCGCG GGTAGCTTCA AGGAACACAA CAAACACATT
GTTGGCGAGA CGACCTCTTG CAACGTCTGC CATGACCCGC ACGGCATCAG CAGTACCCAG
GGCACGGCTC TGAGCAACAG CCGATTAATC AATTTCCAAA CTGGTGTTGT AACCAAGAGT
GGCGCGCAGG CCATTCGCTG GGAGCGTGTG GGCACGACCG GCGGTCGCTG CTACCTGTCC
TGTCATGGGA AAGACCACAA CGGCTTGTCT TATTAA
|
|---|
| Protein sequence | MVLLLWAGAP AQSASIVANK HNLSATGPGT IKATSEGEVC VFCHVPHNSR ATGPLWNRDQ
PVGSYTPYTS STRKISAPGQ PTGASLLCLS CHDGTIALGK VSSRTANIAI AGGKNNFLLG
DQSYIGTDLS DDHPVSFLYS SVLSNTELRT PTGAVKLDAS GQMQCTSCHS PHDNANGKFL
VVSNIKSGLC TNCHNKSYWA ASDHQTSTKT WNGVGTNPWL HTTNTPQNVT NNACESCHRP
HTAPGRQQLL NSATEETNCL VCHSGTVATS AKNIQIELNK TSQHSVGAYL NVHDAGEANL
MTTAHVECQD CHNPHSANST AGSAPGTTPI ALPGSLSNVR GITISGAAVS PVTAEYQICL
RCHGDSTSRT PASRTARVIV QTNTRLEFDT ANPSYHPIAG VGKATGVTGK TVPSLIAPWT
TTSVMNCSDC HNNNAGPNTG GTGPNGPHGS TNPLLLERSY VVTDPATESA ANYALCYKCH
SRTAIIGTGA GSFKEHNKHI VGETTSCNVC HDPHGISSTQ GTALSNSRLI NFQTGVVTKS
GAQAIRWERV GTTGGRCYLS CHGKDHNGLS Y
|
|---|
| |