| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0125 |
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| Symbol | |
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| ID | 3960224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 129460 |
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| End bp | 130530 |
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| Gene Length | 1071 bp |
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| Protein Length | 356 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 637914963 |
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| Product | TMAO reductase system periplasmic protein TorT |
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| Protein accession | YP_521417 |
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| Protein GI | 89898946 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | [TIGR02955] TMAO reductase system periplasmic protein TorT |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.209333 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAAAAA TATCCGCACC CACCCTGTTC GCCGGTGTCT TGTTGACGGC CTCCTTCGCG
GCCCCAGCGG CGAATTGGTA CCCCTATGCG GCAGAGCAGA CAGAGCCCGC GTTCTCTGAC
ACAGGTGTGA AAAAACCGAT CGACTACAGC CCGCTGCCCA AAGCATCAAA AAAATGGAAG
CTCTGCGTTT CATTTCCCCA CATGAAAGAT GCCTACTGGC TGGGTGTTGA CTACGGTGTG
GTTGAGGAAG CCAAGCGTCT TGGTGTGTCG GCTCAGGTAC TCGAAGCCGG TGGTTATACC
AACTTGAACA AGCAAATTTC GCAAATTGAG GATTGCGTCG CCGGCGGCGG TCAGGCCGTG
GTTATTGGCG GTATTTCTGC GGACGGCCTG GTCAATCTGG TCAAGTCACT CAAAGCCAAA
AACATCCCAA CCGTCGATGT CATCAACGGC ATCAATTCTC CCGACCTGAC CGCAAAGTCG
CTTGTGTCCT TCTACACGAT GGGACAAGAG GCGGGCGCCT ATTTGGCCAA AAAGCATCCC
GCCGGAAGCG CCAAGGCTGT CGTCGCGTGG TTTCCTGGAC CCGCTGGCGC TGGTTGGGTG
GAAGCCGCCA ACAAAGGTTT CGCTGAGGCT GTCAAGGGCA GTTCCCTGGA AGTGATGGCC
CCGATCTATG GTGATACAGG CAAGGAAGTC CAAGCCAAGT TGGTTGAGGA CGCCTTGCAG
TCGAACCCCG CCATCCGCTA TATCGCAGGC ACAGCAGTCA CCGCCGAAGT GAGCCAAGGC
ATCGTGCGCG CGCGCAACCT GAAAGACAAA GTGCAAGTGA TTTCGTTTTA TTTGACCCCC
GACGTCTACG CCGGCATTGA AAAGGGCACG ATCATGGCGT CTCCCGCTGA CGCCATGGTG
ATTCAAGGGC GCATAGCGAT CGATCAAGCG GTGCGTGCCC TGGAAGGCAA GGACCTGATC
AAGCACGTGG GGCCCAAGAT TGTCACGATC GACAAAGCCA ACTTGAAGCA GATTCGCCGT
GATGATGTCT TGCCACCGGC ATCGTTCAAG CCATTGTTTG AAGTCAAATA G
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| Protein sequence | MKKISAPTLF AGVLLTASFA APAANWYPYA AEQTEPAFSD TGVKKPIDYS PLPKASKKWK
LCVSFPHMKD AYWLGVDYGV VEEAKRLGVS AQVLEAGGYT NLNKQISQIE DCVAGGGQAV
VIGGISADGL VNLVKSLKAK NIPTVDVING INSPDLTAKS LVSFYTMGQE AGAYLAKKHP
AGSAKAVVAW FPGPAGAGWV EAANKGFAEA VKGSSLEVMA PIYGDTGKEV QAKLVEDALQ
SNPAIRYIAG TAVTAEVSQG IVRARNLKDK VQVISFYLTP DVYAGIEKGT IMASPADAMV
IQGRIAIDQA VRALEGKDLI KHVGPKIVTI DKANLKQIRR DDVLPPASFK PLFEVK
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