| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0116 |
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| Symbol | |
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| ID | 3962817 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | + |
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| Start bp | 117774 |
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| End bp | 118970 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 637914954 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_521408 |
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| Protein GI | 89898937 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.864855 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATCCT CGCGCAATCC TAACAAGTCC CTGTGGCTGG TGTTGCTGGC CCTGATGTTG
GCGTTCGTGT TTGAAACGGC GGCGTGGTGG TGGGCCAGCC AGACACCGCG CGCCTCGTCG
CTGCAGGGGC CGATCTGGCT CGGACTGGGC GCAGCACTGT GTGGGCTGGC AGCCGCCGTC
TTGCTGTGGC GCCAACTACG GACCGCGACG CGTGCAACTC GACGAGCCCG CCAATTGCTG
GCCTCCAGCC TGGACACGCT GGACGTGGGC CTGGAGATTT GGGACGAGCA CGACCGACTG
GTGCTCTACA ACAAAAAAAT CAACCTGATC TACAAGGGCT TCCACACGCC AGCAGACATC
GGTCAGACCT TTGAAGCCCT GATGCGCGCC AAGCTGAAAC GACAGGCGAT CCCGGCGGCC
ATCGGCTGCG AGCAAGAGTG GCTGGCCCAG CGTCTGGCGT CGCGTGGGAC GCACAAGGCG
CACACCTTGA AAGAACTCAC GCGCAACCAG TGGGTCAATT TCTACGAAAC CCGAACATCC
GAGGGCTATC TGGTGGCTGC CTGGGTCGAC GTCACGGAAC TGGTCCTCAA AGGCAAGGTG
CTGGAGGCCA ACAACCAGCG CCTGGCCCAA CAAACCGCCA TGGACGGCTT GACCGGTCTG
GCCAACCGCA GGCGTTTTGA CGAAGCCCTG ACCGTCGAAT GGCAGCGTGC CGCTCGCGGC
CGCACGCCTT TGAGCCTCTT GATGGTGGAT ATTGATCACT TCAAGAATTA CAACGACAAC
TATGGGCATC TGGCCGGCGA CCAGTGCCTG CGGCGGGTGT CCAGCGTGCT CAGCCGTTGC
GTGCGCCGGG CTGGCGAACT GGTCGCGCGC TACGGCGGTG AGGAATTTGT GCTGTTACTG
CCCGGCGCCG ACATGGCCCA TGCTTGCGAG ATCGCCCAAA TGTGCCTGGA CCTGATGCAG
CAGGAGTGTG TGGCGCACGC CGCCTCACCC ACCTCGGTGT ATGTCACGTT GAGCATAGGC
GTGGCGTGTG CGCTGCCTGA CGCCATGCTG GACGACCCCG CTTCCCTGGT CAATGCGGCC
GACGCCGCCA TGTACCGTGC CAAGTCCAGC GGGCGAGCGC ACTACGAAGT GGCTGACCAG
GCCGACTGGG AGATCGACGA CAACACACCT CGAACCCAGC CGTCCTCCTT GTCCTGA
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| Protein sequence | MKSSRNPNKS LWLVLLALML AFVFETAAWW WASQTPRASS LQGPIWLGLG AALCGLAAAV
LLWRQLRTAT RATRRARQLL ASSLDTLDVG LEIWDEHDRL VLYNKKINLI YKGFHTPADI
GQTFEALMRA KLKRQAIPAA IGCEQEWLAQ RLASRGTHKA HTLKELTRNQ WVNFYETRTS
EGYLVAAWVD VTELVLKGKV LEANNQRLAQ QTAMDGLTGL ANRRRFDEAL TVEWQRAARG
RTPLSLLMVD IDHFKNYNDN YGHLAGDQCL RRVSSVLSRC VRRAGELVAR YGGEEFVLLL
PGADMAHACE IAQMCLDLMQ QECVAHAASP TSVYVTLSIG VACALPDAML DDPASLVNAA
DAAMYRAKSS GRAHYEVADQ ADWEIDDNTP RTQPSSLS
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