| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_0088 |
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| Symbol | |
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| ID | 3960089 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007908 |
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| Strand | - |
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| Start bp | 88705 |
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| End bp | 91500 |
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| Gene Length | 2796 bp |
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| Protein Length | 931 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637914926 |
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| Product | pyruvate phosphate dikinase |
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| Protein accession | YP_521380 |
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| Protein GI | 89898909 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0574] Phosphoenolpyruvate synthase/pyruvate phosphate dikinase |
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| TIGRFAM ID | [TIGR01828] pyruvate, phosphate dikinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACAAGCA GCAAGAAATA TGTGTACGCC TTTGAAGAGG GCGATGGCAA AAACAAAATG
CTGCTTGGCG GCAAGGGGGC CAATCTGTGC GAGATGACGC AGATTGGTTT GAACGTGCCG
CCCGGCTTCA CCGCCAGCAC CGATGCCTGC AACGCCTATC TGGAAAAAAA CCAGTTGCCA
CCCGGCCTGA TGGATGAAAT CCGAACCCAC ATGGCCGCCC TGGAGAAGAA AACCGGCAAA
GGCTTCGGCG ACGCCAAAAA CCCGCTGCTG ATCTCGGTGC GCTCCGGTGC GGCGATGTCG
ATGCCGGGCA TGATGGATAC CATCCTGAAC CTCGGCCTCA ATGAGGTTTC GCTGAAAGGG
CTGATCACAC AAACCGGCAA CGAGCGCTTC GCGTATGACG CCTATCGCCG TTTTATCCAG
CTGTTCGGCA AGATCGCGCT CAACATCAGC GACGAACATT TTGACGAGCG CATGGTGGCC
ATCAAGCGCA AATACGGCGC GCCGCAGGAT GTGGACCTGA ACACCGAGCA CCTGAAGGAG
CTGGCGGGCG AATTCCTGGC CATCGTGCAA CGCCAGACCG GCCAAGCCTT TCCGCAGGAC
CCGTTTGTGC AGCTCGAAAT TGCCGTGGGC GCGGTGTTTC GCTCCTGGAT GGGCAAACGC
GCGGTGGACT ACCGCAAACA ATTCAGGATC ACCAAAGCAC AGGCCAACGG TACGGCGGTG
AGCATCTGCA CCATGGTGTT TGGCAACATG GGCAACGACT CCGGCACCGG CGTGGGCTTT
ACGCGCAACC CGGGCACCGG TGAAAACGTG ATTTACGGCG AATATCTGGT CAACGCCCAG
GGCGAGGACG TGGTGGCGGG CATTCGCACG CCCAAGGCGA TCGCCGAAAT GGAACAGGAA
ATGCCGGAAA TTCACCGCCA GTTGATTCAG CTGCGCAGTC GGCTGGAGTC GCACTACCAT
GAGGTGCAAG ACTTTGAATT CACCATCGAG AAAGGCATTC TGTACTGCCT GCAAACCCGC
AACGGCAAGA TGAACGCGCG CGCCATGGTG CGCACCTCGG TCGAAATGTT TCACCAGGGC
CTCATCACCA AGGAGCGCGC GCTGTTGCGC ACCGAGCCCG CCGTGCTGGA GCAACTCCTG
GTGCCGCAAC TGGCCCCCAA TTTTCACGCC AAGTCGCTGG CGCAAGGGCT GTCGGCCTCG
CCCGGCGCGG CGTCCGGCAA GATTGTGTTC GACGCCGACA CCGCCGAGAC GCGCGGGCGT
GCCGGTGAAA AAATCATCCT GGTGCGGGAA GAAACCAAAC CGGAAGACAT TCACGGCTTT
TTCCAGGCGC AGGGTATCTT GACCAGCCGG GGCGGCAAGA CCTCGCATGC TGCGGTGGTG
GCGCGCGGCA TGGGCAAGCC TTGCGTATCA GGCTGCGAGC AGATCGTCAT CAACGACCAG
TTGCGCAGCG CCAAGGTTGG CGACACTGTT CTAAGGGAAG GCGACGTCAT CACCATTGAC
GGCGGTACCG GCCATGTCTA CGCGGGCGAA ATACCGACCG TCGAAGCCGA ATTTTCCGAG
GAAATGAACA CCCTGCTGGG CTGGGCCGAC GAAGTGGCGG CGCTCAAGGT CATGGCCAAT
GCCGATTCAC CGGTCGACGC GCTGCGCGCG CGTGAGTTTG GCGCCATGGG AATCGGCCTG
TGCCGCACCG AGCGCATGTT CAACGCCACC GACCGCTTGC CGATCGTGCA GGAAATGATC
CTGGCCGAAA CGCTGGAAGA GCGGCAAGCG GCACTGGACC GGCTGCTGCC GATTCAGCGC
GCTGACTTCA AGGGCATCTT CAAGGCGATG AAGGGCTTGC CCGTCACCGT GCGGTTGCTG
GACCCGCCGA TGCACGAGTT CTTACCCACT GCGGCGCAGC TTGAGCTCGA AATTGCCCAT
CTGCACCAAT TACGCGACAC CATCAAGGCC CTGGAAGACC TGCCCGAAAC CCTCAAGATG
CTCAACCCCA AGCTGTACCA GCAATATGCG GACGGCCTGA CCCCCTTGAT GGGTGCTTTG
GGCACTTTCA AGAAGTCGCA CATGGAGGAC GAAGTCATCG CCAAAAAGGA AAAAATCCTG
AAAAAAGTGC GCGCGCTGGC CGAAGTCAAC CCGATGCTGG GCCATCGTGG TGTGCGTCTG
GGCATCACCT ACCCCGAGAT CTACTCGATG CAGATCCGCG CGATTCTGGA AGCGGCTGCC
CTGTGTGGCA AGCAAGGCAT TGAGATCTAT CCCGAAATCA TGGTGCCGCA GGTGGCCACG
GTGGAAGAGC TCAAGCGCAT TCACAGCTAT GTGCAGCGCA TCCGGCAGGA AGTGCGCGCC
ACCCATGGCA TCGACGTGCA GTTCAAGTTT GGCTCCATGC TCGAAGTGGT GCGTGCCTGC
ATGCGCTCCG GGCGCATGGC CGAGATTGCC GAGTTTTTCT CGTTCGGCAC CAACGACCTG
AGCCAGGCCA CGTTCTCCTT CAGCCGTGAG GACGCAGAAA ACAAATTCCT GCCCTTCTAC
AACGAGACCG GCATTCTGGA AGACAACCCG TTCGAGGTGT TGGACATCAA GGGCGTGGGG
CAATTGATGA AAATGGCGGT GCAAAACGGC CGCGTCACCA ACCCGGACCT GAAAGTGGGC
ATCTGTGGCG AACATGGCGG GCACCCCGGC TCCATCCGTT TTTGCCATCA CATCAAGCTC
AACTACGTGT CGTGCTCGGG ACCGCGCGTG CCGATCGCGC GCCTGGCGGC GGCTCAGGCC
AAGCTGCTGG AAGACCAGTA TCGGGAACCG GTCTAA
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| Protein sequence | MTSSKKYVYA FEEGDGKNKM LLGGKGANLC EMTQIGLNVP PGFTASTDAC NAYLEKNQLP
PGLMDEIRTH MAALEKKTGK GFGDAKNPLL ISVRSGAAMS MPGMMDTILN LGLNEVSLKG
LITQTGNERF AYDAYRRFIQ LFGKIALNIS DEHFDERMVA IKRKYGAPQD VDLNTEHLKE
LAGEFLAIVQ RQTGQAFPQD PFVQLEIAVG AVFRSWMGKR AVDYRKQFRI TKAQANGTAV
SICTMVFGNM GNDSGTGVGF TRNPGTGENV IYGEYLVNAQ GEDVVAGIRT PKAIAEMEQE
MPEIHRQLIQ LRSRLESHYH EVQDFEFTIE KGILYCLQTR NGKMNARAMV RTSVEMFHQG
LITKERALLR TEPAVLEQLL VPQLAPNFHA KSLAQGLSAS PGAASGKIVF DADTAETRGR
AGEKIILVRE ETKPEDIHGF FQAQGILTSR GGKTSHAAVV ARGMGKPCVS GCEQIVINDQ
LRSAKVGDTV LREGDVITID GGTGHVYAGE IPTVEAEFSE EMNTLLGWAD EVAALKVMAN
ADSPVDALRA REFGAMGIGL CRTERMFNAT DRLPIVQEMI LAETLEERQA ALDRLLPIQR
ADFKGIFKAM KGLPVTVRLL DPPMHEFLPT AAQLELEIAH LHQLRDTIKA LEDLPETLKM
LNPKLYQQYA DGLTPLMGAL GTFKKSHMED EVIAKKEKIL KKVRALAEVN PMLGHRGVRL
GITYPEIYSM QIRAILEAAA LCGKQGIEIY PEIMVPQVAT VEELKRIHSY VQRIRQEVRA
THGIDVQFKF GSMLEVVRAC MRSGRMAEIA EFFSFGTNDL SQATFSFSRE DAENKFLPFY
NETGILEDNP FEVLDIKGVG QLMKMAVQNG RVTNPDLKVG ICGEHGGHPG SIRFCHHIKL
NYVSCSGPRV PIARLAAAQA KLLEDQYREP V
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