Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rfer_0079 |
Symbol | |
ID | 3960080 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodoferax ferrireducens T118 |
Kingdom | Bacteria |
Replicon accession | NC_007908 |
Strand | - |
Start bp | 79028 |
End bp | 81037 |
Gene Length | 2010 bp |
Protein Length | 669 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 637914918 |
Product | AsmA |
Protein accession | YP_521372 |
Protein GI | 89898901 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG2982] Uncharacterized protein involved in outer membrane biogenesis |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.178612 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCCCTAT CGCCCTCCTA CCACGCCATG ACTCTGCCTC GTTCGCTTAA ATGGATTGCT GGCGCTGTCA TCGCGCCCGT CGTGCTGGCG CTTCTATTCA TCGCAATTTT CGGCTGGAAC TGGCTGCGCG CGCCGATTGA ACGCATGGCG CTGGAAAAAA CCGGTCGGGT GCTGGCCATC AACGGCGATC TGCGCGTGAC CCTGGGCTGG CCCCGGCCGC GCCTGCGGGC CAACGCGGTG ACATTCGCCA ATCCGCTCTG GACCCAGGAA AAGCAAATGC TCGCCGCCGA CGCGGTGGAG ATCACGCTCG ACCTGTCTCA GTTGTTGGGA CGCAAGCTCG TGTTCCCGGA ACTGCGGCTG GAGCGACCGG TGGTGTTTCT GGAGCAGGGC ACCGAGGGGC GCAAGAGCTG GTTGCTGGAC CAGCAGCAAC AGGACCCGGG CGCACGCATC CAGATCGACC GCCTGACGCT GGATCAGGGT ACGCTCGGCT ATGACGATGC GGTCCAAAAA ACCAGTATTC GGGCAGAGCT CGCCAGCTTG ACGCCGCCCG CAGGAAGCAC GGCCGACACC GGCTTGACTT TCAGCGCCCA CGGGCGCTAC AAGGGCCAGG CGCTCACGGC GCAGGGCAAC GGCGGGCCGG TGCTGGCCTT GCGCGACGAG AGCACACCCT ACCCTTTGAC AATTGACGCC AGCGTGGGCC ACACCCGCGT GCGCGCAGAG GGCAGCGTCA CCAGCCTGCT CAAATTTACC GCTGTGGATC TGGCGCTGGC ACTCAGCGGC GACAACCTGG CGCAGCTCTA TCCCTTGCTC GGCATCACCT TCCCGGCCAC CCGCAGCTAC GTGACGGCCG GCCACCTGCT GCACAGCGGC AACAGTTGGC GCTACGAGAA GTTCTCGGGC CGCATCGGCA CCAGTGACAT CGCCGGCTCG CTCCAGGTCA AAACCGGTGG CCAGCGCCCG GCGTTGACAG CAGAGCTGAC CTCCAGTGTG CTTGATCTGG CAGACCTGGG ACCGCTGATC GGCTCGCGCC CCGGCAGCGT GCAAGCCGCC AAACAGGCGG CCCGGCAATT GCCCACCGAA CCGCCTCAGA CCGCCGCAGT CACACCTGCG CAAGCCCGTG TGCTGCCTGA CCAGTCGTTC AACACCGAGC GCTGGCGCAG CGTGGACGCC GAGGTGAGCT TGCGGGCCAA GGCCCTCAAG CGCGAGAAGG AGCTGCCACT GGAAGACCTG GTGGCCCATT TGAGCCTGCA GGATGGCCTG TTGACGCTCG ATCCGCTCAA TTTTGGCCTG GCTGGCGGCC AGCTCAACAG CGTGGTCACA CTCGATGGGC GCACCGATCC GATCACGGCG CACGCCAAGG TGCGGGCCCG AAAGATATTG CTGGCCAAGC TGTTTCCGAC CGCTGAGCTG AACCAGGCCA GCATCGGCCA AATCAACGGC GAGTTCGACC TGGCCGGGCA AGGCAACTCG GTGGGTCGAA TGCTGGCAGG TTCCAATGGC AAGGTCGGAC TGGTCGTCTC CGGCGGCGAG ATCAGCAAGT TGATGATGGA AAAAGCCGGT CTGCATTTGT GGGAAATACT GCAACTGAGC CTGAGCGGCG ACCGGCTCAT CAAATTGCGT TGCGCGGTGG CCGACTTTGA GGTCAAGAAC GGCAAAATGC AAACCGACGC ACTGGTGCTG GACACCCAGG TCACCACCCT GCTTGGCAGC GGCAACGTCG ATCTGGCGCA GGAGCGGCTG GACCTGACGT TCAACCAGAA GACCAAGGCC ACCAGTCCCC TGGCCTTGCG CAGCCCGATC TATGTGCGCG GCAGTTTTGC CAAGCCCGAG CTGGGCGTCG ACAAGACGCG TGTCGCGGTG CGCGCCTTGG GTGCGCTGGC ACTGGGCGTC GTCAATCCAT TCCTGACGCT GCTGCCCTTG ATCGATGCCG GTCCGGGCCA GGACAGCGAT TGCGGGCAAC TGGTGCGCGA TGCGCGGGCG CTACCGCACC CAAAGAGTCA AAAGAAATGA
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Protein sequence | MPLSPSYHAM TLPRSLKWIA GAVIAPVVLA LLFIAIFGWN WLRAPIERMA LEKTGRVLAI NGDLRVTLGW PRPRLRANAV TFANPLWTQE KQMLAADAVE ITLDLSQLLG RKLVFPELRL ERPVVFLEQG TEGRKSWLLD QQQQDPGARI QIDRLTLDQG TLGYDDAVQK TSIRAELASL TPPAGSTADT GLTFSAHGRY KGQALTAQGN GGPVLALRDE STPYPLTIDA SVGHTRVRAE GSVTSLLKFT AVDLALALSG DNLAQLYPLL GITFPATRSY VTAGHLLHSG NSWRYEKFSG RIGTSDIAGS LQVKTGGQRP ALTAELTSSV LDLADLGPLI GSRPGSVQAA KQAARQLPTE PPQTAAVTPA QARVLPDQSF NTERWRSVDA EVSLRAKALK REKELPLEDL VAHLSLQDGL LTLDPLNFGL AGGQLNSVVT LDGRTDPITA HAKVRARKIL LAKLFPTAEL NQASIGQING EFDLAGQGNS VGRMLAGSNG KVGLVVSGGE ISKLMMEKAG LHLWEILQLS LSGDRLIKLR CAVADFEVKN GKMQTDALVL DTQVTTLLGS GNVDLAQERL DLTFNQKTKA TSPLALRSPI YVRGSFAKPE LGVDKTRVAV RALGALALGV VNPFLTLLPL IDAGPGQDSD CGQLVRDARA LPHPKSQKK
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