Gene Rfer_0079 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRfer_0079 
Symbol 
ID3960080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodoferax ferrireducens T118 
KingdomBacteria 
Replicon accessionNC_007908 
Strand
Start bp79028 
End bp81037 
Gene Length2010 bp 
Protein Length669 aa 
Translation table11 
GC content64% 
IMG OID637914918 
ProductAsmA 
Protein accessionYP_521372 
Protein GI89898901 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG2982] Uncharacterized protein involved in outer membrane biogenesis 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.178612 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCCCTAT CGCCCTCCTA CCACGCCATG ACTCTGCCTC GTTCGCTTAA ATGGATTGCT 
GGCGCTGTCA TCGCGCCCGT CGTGCTGGCG CTTCTATTCA TCGCAATTTT CGGCTGGAAC
TGGCTGCGCG CGCCGATTGA ACGCATGGCG CTGGAAAAAA CCGGTCGGGT GCTGGCCATC
AACGGCGATC TGCGCGTGAC CCTGGGCTGG CCCCGGCCGC GCCTGCGGGC CAACGCGGTG
ACATTCGCCA ATCCGCTCTG GACCCAGGAA AAGCAAATGC TCGCCGCCGA CGCGGTGGAG
ATCACGCTCG ACCTGTCTCA GTTGTTGGGA CGCAAGCTCG TGTTCCCGGA ACTGCGGCTG
GAGCGACCGG TGGTGTTTCT GGAGCAGGGC ACCGAGGGGC GCAAGAGCTG GTTGCTGGAC
CAGCAGCAAC AGGACCCGGG CGCACGCATC CAGATCGACC GCCTGACGCT GGATCAGGGT
ACGCTCGGCT ATGACGATGC GGTCCAAAAA ACCAGTATTC GGGCAGAGCT CGCCAGCTTG
ACGCCGCCCG CAGGAAGCAC GGCCGACACC GGCTTGACTT TCAGCGCCCA CGGGCGCTAC
AAGGGCCAGG CGCTCACGGC GCAGGGCAAC GGCGGGCCGG TGCTGGCCTT GCGCGACGAG
AGCACACCCT ACCCTTTGAC AATTGACGCC AGCGTGGGCC ACACCCGCGT GCGCGCAGAG
GGCAGCGTCA CCAGCCTGCT CAAATTTACC GCTGTGGATC TGGCGCTGGC ACTCAGCGGC
GACAACCTGG CGCAGCTCTA TCCCTTGCTC GGCATCACCT TCCCGGCCAC CCGCAGCTAC
GTGACGGCCG GCCACCTGCT GCACAGCGGC AACAGTTGGC GCTACGAGAA GTTCTCGGGC
CGCATCGGCA CCAGTGACAT CGCCGGCTCG CTCCAGGTCA AAACCGGTGG CCAGCGCCCG
GCGTTGACAG CAGAGCTGAC CTCCAGTGTG CTTGATCTGG CAGACCTGGG ACCGCTGATC
GGCTCGCGCC CCGGCAGCGT GCAAGCCGCC AAACAGGCGG CCCGGCAATT GCCCACCGAA
CCGCCTCAGA CCGCCGCAGT CACACCTGCG CAAGCCCGTG TGCTGCCTGA CCAGTCGTTC
AACACCGAGC GCTGGCGCAG CGTGGACGCC GAGGTGAGCT TGCGGGCCAA GGCCCTCAAG
CGCGAGAAGG AGCTGCCACT GGAAGACCTG GTGGCCCATT TGAGCCTGCA GGATGGCCTG
TTGACGCTCG ATCCGCTCAA TTTTGGCCTG GCTGGCGGCC AGCTCAACAG CGTGGTCACA
CTCGATGGGC GCACCGATCC GATCACGGCG CACGCCAAGG TGCGGGCCCG AAAGATATTG
CTGGCCAAGC TGTTTCCGAC CGCTGAGCTG AACCAGGCCA GCATCGGCCA AATCAACGGC
GAGTTCGACC TGGCCGGGCA AGGCAACTCG GTGGGTCGAA TGCTGGCAGG TTCCAATGGC
AAGGTCGGAC TGGTCGTCTC CGGCGGCGAG ATCAGCAAGT TGATGATGGA AAAAGCCGGT
CTGCATTTGT GGGAAATACT GCAACTGAGC CTGAGCGGCG ACCGGCTCAT CAAATTGCGT
TGCGCGGTGG CCGACTTTGA GGTCAAGAAC GGCAAAATGC AAACCGACGC ACTGGTGCTG
GACACCCAGG TCACCACCCT GCTTGGCAGC GGCAACGTCG ATCTGGCGCA GGAGCGGCTG
GACCTGACGT TCAACCAGAA GACCAAGGCC ACCAGTCCCC TGGCCTTGCG CAGCCCGATC
TATGTGCGCG GCAGTTTTGC CAAGCCCGAG CTGGGCGTCG ACAAGACGCG TGTCGCGGTG
CGCGCCTTGG GTGCGCTGGC ACTGGGCGTC GTCAATCCAT TCCTGACGCT GCTGCCCTTG
ATCGATGCCG GTCCGGGCCA GGACAGCGAT TGCGGGCAAC TGGTGCGCGA TGCGCGGGCG
CTACCGCACC CAAAGAGTCA AAAGAAATGA
 
Protein sequence
MPLSPSYHAM TLPRSLKWIA GAVIAPVVLA LLFIAIFGWN WLRAPIERMA LEKTGRVLAI 
NGDLRVTLGW PRPRLRANAV TFANPLWTQE KQMLAADAVE ITLDLSQLLG RKLVFPELRL
ERPVVFLEQG TEGRKSWLLD QQQQDPGARI QIDRLTLDQG TLGYDDAVQK TSIRAELASL
TPPAGSTADT GLTFSAHGRY KGQALTAQGN GGPVLALRDE STPYPLTIDA SVGHTRVRAE
GSVTSLLKFT AVDLALALSG DNLAQLYPLL GITFPATRSY VTAGHLLHSG NSWRYEKFSG
RIGTSDIAGS LQVKTGGQRP ALTAELTSSV LDLADLGPLI GSRPGSVQAA KQAARQLPTE
PPQTAAVTPA QARVLPDQSF NTERWRSVDA EVSLRAKALK REKELPLEDL VAHLSLQDGL
LTLDPLNFGL AGGQLNSVVT LDGRTDPITA HAKVRARKIL LAKLFPTAEL NQASIGQING
EFDLAGQGNS VGRMLAGSNG KVGLVVSGGE ISKLMMEKAG LHLWEILQLS LSGDRLIKLR
CAVADFEVKN GKMQTDALVL DTQVTTLLGS GNVDLAQERL DLTFNQKTKA TSPLALRSPI
YVRGSFAKPE LGVDKTRVAV RALGALALGV VNPFLTLLPL IDAGPGQDSD CGQLVRDARA
LPHPKSQKK