| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rfer_4260 |
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| Symbol | |
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| ID | 3959835 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodoferax ferrireducens T118 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007901 |
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| Strand | - |
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| Start bp | 15694 |
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| End bp | 18189 |
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| Gene Length | 2496 bp |
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| Protein Length | 831 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637909468 |
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| Product | Type IV secretory pathway VirB4 components-like |
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| Protein accession | YP_515945 |
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| Protein GI | 89885747 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAACA TCGCTGATCT TGTTGCTGGT TATAACCGCT CAGCCCGTGG CTTTCAGGAA
CTTCTTCCCT ACATGTGTCT TTGGGACGAA CAAACCGTAG CCACACTTGA TCAGGGTATG
TTGGCTCTGT ATGAGTATGA TGGTCTGGAT GCAGAGGGGC GCTCCGAAGC CGAGACCAGT
CTTGCGGTAA ACGCTTTTGA ACAGGCATTC TCTGGTTTCG GATCTGGCTC AACGGTATGG
TCCTATGTCG ACCGGCGTAA GACAGACGCA TACCCACGGG GACATTTTTC CGACAATGTT
GCCCGATTTA TAGATCAAAC GTGGCAGGAC AAAGTCACAT CCACTCAATA CGAGAATAAA
TATTCTTTAG CTGTACATCA GCGTGCCAAT GTCGGGACCA TGGCACTGTT CGACACGGTT
GACCTTTTGG TCAAGGAAGA GGGCCTTGGG TTGACTGCTG CTTTTGGAAA AGCCATCAAA
ACGCAATTAT CGCTAAAAGC GCGACGGTCC GTCGACGAGC GCAAGATGCA AGCGGCAAAG
ACGGCGCTTG AGGACAAATT GCTCTCCCTT GAGAGCGGTA TGAGAAATTT GGGTTTGCGG
CGTCTCGGCG AGGAGCGTCT GATGGCGGAA CTCTACAACC GGGTGTCGCC AGCCTCACCA
TCAAGAACCG CATACCCGGT ACCCACAATT CCATCGTTTC TGAGCAACAT GCTTTGCTCT
GACTCGCTTC GCCGAACGCC CGACGCCCTG GTTTTCACCA ATGAAAAGGA GAAATACGTC
GGGGTGGTCA GTCTCAAGGG ATTCAGTGGC AATGCTGAAA CCGTGGTTAG CCAGCTTGAC
TGGCTGACCA CGATTGAGGG AGAAATCACA GTAGCCCACT GTTTTCGATT CATTGACAGG
GACGTTGCAC AAAAGACAAT CGAAGACATA GAGCGCTACA ACATCTCCAA GTCAGTTCCG
TTTTTTCACC GGATGTACAC GACGTTTGCC AAGACCGAGC CCACCAAGTT CAATGAGGGG
CGGCTCGCGA TGGCTCTGGA TGCGAAGGCA GCGCTTGTGG ATCTGTACCA GGCCAACCGT
GCCTTTGGAC ATCACAATTT GACTGTATTG TGTTTTGGCG ATACCTATGA GGAGATGAAG
AGGGTCAGGC AACAAGTGGT TGAGAACCTG AAATTCTCCC GATTCAACGG GCACGTTGAG
CGCATGCACC AGTTGACCGC TTTCACCCAA ACATTACCCG GTCAATGGGG GGCCTCAGTT
CGGTGGAACT TTGTCAGCTT CGGGAATGCG GCCGACATTG CGCCCATCCG CACCCTCACC
AAAGGCCCCG AAAAGTGTGT TCATTTTGAA AAAGAAATCA AGCGCGAATT CCCAGCTCTG
ACATCCATTC CGACCACCGC AGGGACTCCA GCATTTATTG ATTTGTGGGA GCGGGGAGTA
GGGCATTTGA AGGTGATTGG TCCGACGCGT GCTGGCAAAA GTACGGCGAC CAACTTTCTT
TTGTCGCAAT TCAGAAAATA CGAGCCCTGC CGAACGATTG TTATCGACAA AAACTACTCA
TGCCGCATCG CGACATTGCT GCAGGACGGA GTCCATGTTG ACTTGAACCA GAGTGCCAAG
AACGGTACAC GGATGGCGCC GCTGTCATTA CTTGGGCACG AACGACACCA TGGGTTTCTT
GTCAACTGGG TGATTGAACT GATTGAGTCG GGTCGCAATG GCGTCATGTG CAGCCCGGCA
GAAATTGATC GGATTACTCA ATCCATCAGA GGGTTGGCTG AACTTGGGCG CAAGCATTGG
CGGCTTCACT ACTTGGCAAC GTCACTCGGG CCTGACCTCG GGGCCTATCT GGGCCGCTGG
ATCGCAGGTG GTGCAGACGG TAATTGGTTT GACAATGAGC CAGAAGAAGT CGAGATCGGT
CGTCATATTT GTTTTGAATG CCAGGATCTG TTTGGCAATA AAGTTGTCGC CGGCTTGGCG
ATGTCGTACC TCTTTTATTT GATTGAGGGG CTTCTTGACG ATTCACCAAC AATTGTCAGT
ATTGAAGAGA CTTGGTTCTT CCTGGACAAC GAGAAGTTCG CGAAGAAGAT CGACGATTTC
CTTCGCACGC TGGGCAAGCG CAACGGCTCG CTATGGATCG TGACCCAGAC CATGAAAGAA
ATTCAGGAGT GCTCCATCAA AACATCGATC ATGAGCAATA TCCCGAACAC GATCTACCTG
CCTGACCAAA ACATAATGAA CAGTTCGGAA CTCTACATTG AGGCAGCAGG TTTATTGCCA
GAGGAAATCC AGAGAATCGC TGAGGCAACG GACAAAAAAC ACTACTACCT CAAGACGCCA
AGTATTTCAC GAATGTTGGA CCTCGAATTG CCAGAAGAAA TCGTTGTTTG CATAAGCGCC
GGATCAAGAG CGCGGCATAC GTTTGACAAA CACTATGCCA CCAGAGAAGC CAACGCCGGT
TGGAAACAAA GCTATTTCGA AGAGATGATT GGTTAG
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| Protein sequence | MLNIADLVAG YNRSARGFQE LLPYMCLWDE QTVATLDQGM LALYEYDGLD AEGRSEAETS
LAVNAFEQAF SGFGSGSTVW SYVDRRKTDA YPRGHFSDNV ARFIDQTWQD KVTSTQYENK
YSLAVHQRAN VGTMALFDTV DLLVKEEGLG LTAAFGKAIK TQLSLKARRS VDERKMQAAK
TALEDKLLSL ESGMRNLGLR RLGEERLMAE LYNRVSPASP SRTAYPVPTI PSFLSNMLCS
DSLRRTPDAL VFTNEKEKYV GVVSLKGFSG NAETVVSQLD WLTTIEGEIT VAHCFRFIDR
DVAQKTIEDI ERYNISKSVP FFHRMYTTFA KTEPTKFNEG RLAMALDAKA ALVDLYQANR
AFGHHNLTVL CFGDTYEEMK RVRQQVVENL KFSRFNGHVE RMHQLTAFTQ TLPGQWGASV
RWNFVSFGNA ADIAPIRTLT KGPEKCVHFE KEIKREFPAL TSIPTTAGTP AFIDLWERGV
GHLKVIGPTR AGKSTATNFL LSQFRKYEPC RTIVIDKNYS CRIATLLQDG VHVDLNQSAK
NGTRMAPLSL LGHERHHGFL VNWVIELIES GRNGVMCSPA EIDRITQSIR GLAELGRKHW
RLHYLATSLG PDLGAYLGRW IAGGADGNWF DNEPEEVEIG RHICFECQDL FGNKVVAGLA
MSYLFYLIEG LLDDSPTIVS IEETWFFLDN EKFAKKIDDF LRTLGKRNGS LWIVTQTMKE
IQECSIKTSI MSNIPNTIYL PDQNIMNSSE LYIEAAGLLP EEIQRIAEAT DKKHYYLKTP
SISRMLDLEL PEEIVVCISA GSRARHTFDK HYATREANAG WKQSYFEEMI G
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