Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_4180 |
Symbol | fliF |
ID | 3936669 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 4288852 |
End bp | 4290603 |
Gene Length | 1752 bp |
Protein Length | 583 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637906566 |
Product | flagellar MS-ring protein |
Protein accession | YP_512122 |
Protein GI | 89056671 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTGACC ACATCGGGCC AGAACGGCTC GGCATGAAAG GGGTCGTCTT GAACGCACTG CTTGAGATCT GGAATGGAAT GAATGGCCGC CGCCGGGGGC TGTTGATTGG TGGAATTGCC GCGTTGGCCG TGGTGTTGGT GATTTTGACG CGAATTGCAT CTCAACCCTC ATTCCAACTT TTGTATAGTG GGTTGGATCC TGCCGCTGCC GGCGAAGTCG TGGATGCTTT GGCTGCACGG GGCGTGGCCC ATCGAATCGA CGGCGACCAG ATTTTTGTCG ACGCGACCCA GCGCGATGAA CTTCGCATGG CTTTGGCGGG CGAAGGGCTG CCGGCCAATG GGCCCCAGGG GTACGAACTG CTCGATTCGC TGTCTGGCTT CGGAACCACC TCGCAGATGT TTGACGCCGC CTACTGGCGC GCGAAGGAGG GGGAGCTGTC GCGGACCATT CTTGCCTCGC CGGCTATCCG AGCGGCCCGT GTTCACATCG CCAACCCGTC CTCCGACCCA TTTCAGCCAA CCAATGAAGT CACCGCGTCT GTCGCGATTC GTCCGGCATC TGGCGGTCTT GCGCCTGGTC ATGCCCATGC GCTCCGGTAT CTGGTCGCCT CGTCCGTGCC TGGCCTGCGA CCCGAGAATG TAACGGTGAT CGATGCCGAT TCGGGGCAGG TTCTCGGCGG GCAGGGGCAG ATGACGCCCG CTGCCGATGC TGCTGGGCGG GCGACGACCC TGCAGCAGAA CGTCGAACGC TTGCTGGCGG CTCGTGTCGG ACCAAGCAAC GCTGTGGTCC AGGTTTCAGT TGAGTTGGAG ACCGCCCGCG AGACGATTCT TGAACGCGTC ATCGACCCCG AAAGCCGTGT GATCATTGCG ACGGACACGG AGGAAATGGA CAACGCGTCG ACTGATGGTG CCGCTGCGGG CGTGACCGTT GCCTCTAACT TGCCGGACGG TGATGGCGCA GCAGGCGAAG GATCTTCTGC GCAAACCACC GAATCGCGGG AACGCGTGAC GTTTGATATG TCGGAACTGC AGCGCGAGGT AGAACGGGAA CCGGGTGACA TCCGCCGGAT CACGGTCGCG GTGCTCGTCA ACGGAGTGGA AGAGATCAAT GCCAGCGGTG TTGCGGAAAC GATCCCACGC CCGGCCGCAG AGCTTGACGC CTTAACGGAG CTCGTCCGAT CTGCGGTTGG CTACGACGAG GCGCGGGGGG ATATTGTCAC GATCCAGTCG ATGGCATTCG ATGCGGCAGC TGCCACGGAA CTGACCGAAG CGGGCTTTGC CGATCGCCTA AATCTCGACG TAGGTCAGAT CGTTCAGACA TTGCTGTTGG CGGCCGTCGC CCTGGCGATC GCATTTGGAT TGCTGCGTCC GCTTTTGGCA CGCTCAGGCG GCGACTCACT GAACACATTG CCGCCTCTTG AGCCGACCAA CGGCTTACCT GCGCCGTCCG ATGGCGCTGT CTCTGGCGAT ACGTCTCTGC CTACAACCAG TACCGCTGAT GTGCCCGAGA TTACCATGGC ATCAACCGCG CCCAAGGAGC TGCCTCCTCT TCCTGCGGTT TCGCAAATGG GCTCTGCCTT CGATGATGCC CTTCCAATGA TGATGGCCGG ATCATTGCCC GGAGACCTTG AGCAGAATCT TGAGGACATG GATCCCGTTG ATCGCCTCCG CCTTCTCATT CAGGAGCGGG AGGAAGAGAC GGTTCAGATC TTGCGGAGTT GGATGAATGA AGATGAGGAA GCGGCGAGAT GA
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Protein sequence | MSDHIGPERL GMKGVVLNAL LEIWNGMNGR RRGLLIGGIA ALAVVLVILT RIASQPSFQL LYSGLDPAAA GEVVDALAAR GVAHRIDGDQ IFVDATQRDE LRMALAGEGL PANGPQGYEL LDSLSGFGTT SQMFDAAYWR AKEGELSRTI LASPAIRAAR VHIANPSSDP FQPTNEVTAS VAIRPASGGL APGHAHALRY LVASSVPGLR PENVTVIDAD SGQVLGGQGQ MTPAADAAGR ATTLQQNVER LLAARVGPSN AVVQVSVELE TARETILERV IDPESRVIIA TDTEEMDNAS TDGAAAGVTV ASNLPDGDGA AGEGSSAQTT ESRERVTFDM SELQREVERE PGDIRRITVA VLVNGVEEIN ASGVAETIPR PAAELDALTE LVRSAVGYDE ARGDIVTIQS MAFDAAAATE LTEAGFADRL NLDVGQIVQT LLLAAVALAI AFGLLRPLLA RSGGDSLNTL PPLEPTNGLP APSDGAVSGD TSLPTTSTAD VPEITMASTA PKELPPLPAV SQMGSAFDDA LPMMMAGSLP GDLEQNLEDM DPVDRLRLLI QEREEETVQI LRSWMNEDEE AAR
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