Gene Jann_4163 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_4163 
Symbol 
ID3936652 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp4273173 
End bp4273889 
Gene Length717 bp 
Protein Length238 aa 
Translation table11 
GC content60% 
IMG OID637906549 
Productprotocatechuate 3,4-dioxygenase, beta subunit 
Protein accessionYP_512105 
Protein GI89056654 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3485] Protocatechuate 3,4-dioxygenase beta subunit 
TIGRFAM ID[TIGR02422] protocatechuate 3,4-dioxygenase, beta subunit 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.68973 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATTC ATGCCCCCCG CGATCTGTCT CGCCATCCTG CCGCGCTGAC ACCACGCTAC 
AGAAGCTCTG TCCTGCGATC GCCGAAACAG CGGCTGATCG CGCTGCCCGA TGGTCCTGCG
GATCGTACGG GGCCGACCTT TGGCCACGAC ATGATCGGCG CATTGGACCA CGATCTGATC
CTGAACCACG CCCACGACGG TGCGCCTGTA GGGGAGCGGA TCATCGTCCA CGGCCGCGTG
CGGGATGAGG ATGAACGACC CGTTCGGAAT ACTTTGGTGG AGGTTTGGCA GGCCAACGCG
TCGGGTCGCT ATCGACATAA GAAAGATACG TTCATGGGCG CGATAGATCC CAACTTTGGC
GGTTGCGGGC GGACAGTGAC GGACGATCAG GGCTACTACC GGTTCAACAC GATCAAGCCG
GGCGCCTATC CGTGGCCCAA TGGCGGCAAC AACTGGCGGC CTGCCCATAT CCATTTCAGC
GTCTTTGGGG CCGCATTTTG CCAGCGCCTG ATCACTCAGC TTTACTTCGA AGGCGACCCT
CTGATCCCGC TATGTGACAT CGTTCAGACT GTGCCCGACC CGCGGGATAT CGACATGTTG
ATGGCCAAGC TGGATATGGA AACCACCCTG CCTTTCGACA GCATAGCCTA CCGGTTCGAC
ATCGTCTTGC GAGGCGCAAG ATCGACCCCG TTCGAAAACC GGATGGAGGG CAACTGA
 
Protein sequence
MSIHAPRDLS RHPAALTPRY RSSVLRSPKQ RLIALPDGPA DRTGPTFGHD MIGALDHDLI 
LNHAHDGAPV GERIIVHGRV RDEDERPVRN TLVEVWQANA SGRYRHKKDT FMGAIDPNFG
GCGRTVTDDQ GYYRFNTIKP GAYPWPNGGN NWRPAHIHFS VFGAAFCQRL ITQLYFEGDP
LIPLCDIVQT VPDPRDIDML MAKLDMETTL PFDSIAYRFD IVLRGARSTP FENRMEGN