| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4160 |
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| Symbol | |
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| ID | 3936649 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 4270620 |
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| End bp | 4271513 |
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| Gene Length | 894 bp |
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| Protein Length | 297 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637906546 |
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| Product | LysR family transcriptional regulator |
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| Protein accession | YP_512102 |
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| Protein GI | 89056651 |
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| COG category | [K] Transcription |
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| COG ID | [COG0583] Transcriptional regulator |
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| TIGRFAM ID | [TIGR02424] pca operon transcription factor PcaQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 33 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.181035 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCGTC GTATCAAGTT CCGCCACCTT GACGCCTTCA GCGCCATCGC GCGGGCGGGC
AGCCTGAAAC AGGCAGCGGA ACAATTGAAC CTTACACAAC CGGCGATTTC CAAAACGTTG
AAGGAGCTGG AGGATATTGC CGGGGCACGT CTGATGGATC GTAGCCGCGC CGGGGTCCGC
CTTACACCTG CCGGGGCCGT GTTCCTGCAA TTTGCCGAGC AAGGCAGCAA CGCGGTGCGA
CAGGGCTTGC GATCTGTCCG GGGCGAGGCA GAGATGTCGG GTCGTTTGCG CATCGGGGCT
TTGCCAAGCG TCGCGGGCAC ACTGGTTCCG CGCGCTGTCG CAATGTTCAG GGCGAAGGTC
CCGGATACGT TGGTTGAAGT GCAGGACGGA TCGCATCATG ACCTGACGGC GCAGCTGCGC
AGCGGCGGGT TGGATCTGGT GGTCGGGCGT TTGGGGCGGC CCCACGCGAT GGTCGGCCTG
ACCTTCCGGC AGCTCTACAC GGAGCCTGTG ATCGTCGTGG CGCGACCGGG CTCGGACGTC
GCGAAACTGA CCTCCCTGAG CGACTTGTTG GCGTGTCTGG TTCTCTACCC GCCAAATACC
TCCGCCATCC GGCCTCTTGT CGCCCGATCA ATGATCGCGG CTGGCCTGCC GATTTTTCAA
ACCCGGATCG AGACGACCTC TGCCCCCTTC GCCATGGCCA CATTGCAAAC GCATGAGGCC
GCCGTGTGGT TCATCAGTCG AGGTGTGGTG CAACCGGATC TGGACCGGGG GCGTCTTGTA
GCGCTGGACC TGCCGCTTGA GCAAACGGCA GGGGCCGTGG GGATCATGAC CCGCTCCGAT
GACATCGCCA CCAGCGCGGC CCGCGGATTT ATGAAAGCGT TGGCGGAGGC CTAG
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| Protein sequence | MDRRIKFRHL DAFSAIARAG SLKQAAEQLN LTQPAISKTL KELEDIAGAR LMDRSRAGVR
LTPAGAVFLQ FAEQGSNAVR QGLRSVRGEA EMSGRLRIGA LPSVAGTLVP RAVAMFRAKV
PDTLVEVQDG SHHDLTAQLR SGGLDLVVGR LGRPHAMVGL TFRQLYTEPV IVVARPGSDV
AKLTSLSDLL ACLVLYPPNT SAIRPLVARS MIAAGLPIFQ TRIETTSAPF AMATLQTHEA
AVWFISRGVV QPDLDRGRLV ALDLPLEQTA GAVGIMTRSD DIATSAARGF MKALAEA
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