| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4098 |
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| Symbol | |
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| ID | 3936587 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 4206920 |
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| End bp | 4208629 |
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| Gene Length | 1710 bp |
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| Protein Length | 569 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637906484 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_512040 |
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| Protein GI | 89056589 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00991271 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.791743 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACTTAA CCCTTAGAAC AACCTCGGCC CTGGCGCTGA CCGTGGGGCT TCTGGCCACT
CCGGCCATCG CCGATATGGA AGCGGCCATC GCGTTCCTGG ACGAGCATAT CGAGCATTCC
GCGCTGACCC GCGAAGAGCA GGAAGCCGAG ATGCAATGGT TCGTCGACGC GGCCCAACCC
TATCAGGGTA TGGAGATCCG CGTTGTGTCA GAGACCATCG CCACCCACGA ATATGAGGCC
AATGTGCTGG CCCCCATCTT CGAGGCGATC ACCGGCATCA GCGTCACCCA CGACCTGATC
GGCGAAGGCG ACGTGGTGGA GCGTCTGCAA ACGCAGATGC AGACCGGCGA AAACATCTAT
GACGCCTACG TCAACGACAG TGATCTGATC GGCACCCACT GGCGCTATCA GCAGGCCCGC
AACCTGACGG ACTGGATGGC GAATGAGGGC GCGGACGTTA CCAACCCCAA TCTGAACCTT
GACGACTTCA TCGGCCTGTC GTTCACGACG GGTCCCGATG GGCTGCTGTA CCAGCTGCCC
GACCAGCAGT TCGCGAACCT CTATTGGTTC CGCTACGACT GGTTCACCGA TCCAGAAATC
ATGGCCGATT TCCAGGAGCA ATACGGCTAT GAGCTGGGTG TTCCGGTCAA CTGGTCTGCC
TATGAGGATA TCGCGGAATT CTTCACCGGT CGTGAAATCG ACGGTGTCGA GGTCTTCGGT
CACATGGACT ACGGTCGTCG CGATCCGTCG CTGGGTTGGC GTTTCACCGA TGCGTGGATG
TCCATGGCTG GCATGGGCGA CATTGGCGAG CCGAACGGCC TGCCCGTCGA TGAGTGGGGC
ATTCGTGTGA ACGAAGACAG CCGTCCCGTC GGCTCTTGCG TCGCGCGTGG CGGTGCTACC
AACGGCCCGG CCGCAGTCTA CGCCATTGAG TCGTACACCA ACTGGCTGAC CAACTACGCA
CCGCCGGAAG CGGCTGGTAT GAACTTCTCT GAGGCGGGGC CACTGCCGTC GCAGGGTGTG
ATTGCGCAGC AGATGTTCTG GTACACGGCG TTTACCGCGT CGATGGTCGG CGAGGGTGCG
GAAGCGGTGC TGAACGACGA CGGGTCGCCC CGTTGGCGGA TGGCCCCCAG CCCGCACGGT
GTCTACTGGC GCGAAGGTCA GAAGATCGGC TACCAGGACG CGGGGTCCTG GACGTTGATG
CAGTCCACAC CCGTGGACCG GGCGCAGGCC GCATGGCTTT ATGCTCAGTT CGTGACGTCG
ATGACCGTGG ATGTCGAGAA GTCCCATGAG GGCCTCACGT TTATCCGCGA GTCCACGATC
CAGCACGAGA GCTTCACCGA GCGTGCGCCA AACCTGGGGG GTCTGATCGA GTTCTATCGC
TCGCCCGCCC GCACCCAGTG GTCGCCAACT GGTACGAACG TGCCTGATTA TCCACGTCTG
GCGCCGCTGT GGTGGCAGAA CATCGGCGAT GCATCGTCCG GTGCACTGAC CCCGCAAGAG
GCGCTCGATA ACCTTTGTGC GCAGCAAGAG GCCGTTCTGG CCCGTCTTGA GCGGGCAGGC
GTTCAGGGGG ATCTCGGTCC GCTTCTCAAC GATGAAAGCG ATCCGGAGTT CTGGCTGTCT
CAGGACGGTG CGCCCCAGGC CGCCCTTGAG AACGAGGACG AAGAGCCACA AACCGTCAGC
TATGACGAGC TGATCCAATC CTGGCAGTAA
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| Protein sequence | MNLTLRTTSA LALTVGLLAT PAIADMEAAI AFLDEHIEHS ALTREEQEAE MQWFVDAAQP
YQGMEIRVVS ETIATHEYEA NVLAPIFEAI TGISVTHDLI GEGDVVERLQ TQMQTGENIY
DAYVNDSDLI GTHWRYQQAR NLTDWMANEG ADVTNPNLNL DDFIGLSFTT GPDGLLYQLP
DQQFANLYWF RYDWFTDPEI MADFQEQYGY ELGVPVNWSA YEDIAEFFTG REIDGVEVFG
HMDYGRRDPS LGWRFTDAWM SMAGMGDIGE PNGLPVDEWG IRVNEDSRPV GSCVARGGAT
NGPAAVYAIE SYTNWLTNYA PPEAAGMNFS EAGPLPSQGV IAQQMFWYTA FTASMVGEGA
EAVLNDDGSP RWRMAPSPHG VYWREGQKIG YQDAGSWTLM QSTPVDRAQA AWLYAQFVTS
MTVDVEKSHE GLTFIRESTI QHESFTERAP NLGGLIEFYR SPARTQWSPT GTNVPDYPRL
APLWWQNIGD ASSGALTPQE ALDNLCAQQE AVLARLERAG VQGDLGPLLN DESDPEFWLS
QDGAPQAALE NEDEEPQTVS YDELIQSWQ
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