| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4066 |
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| Symbol | |
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| ID | 3936554 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 4172687 |
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| End bp | 4176049 |
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| Gene Length | 3363 bp |
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| Protein Length | 1120 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637906451 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_512008 |
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| Protein GI | 89056557 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.160711 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATGATG CAACCCGCGC CCAGACCCGC GCTGCCGATC CCGCGACGTC GACCTGGCTG
GGGGCCAATG CGGGCTCCGG CAAAACCCGC GTGTTAACGG ACCGCGTGGC GCGGCTGCTG
CTGGACGGTG TGCCGCCCGA GCGGATCCTG TGTCTGACCT ACACCAAGGC CGCCGCGATG
GAGATGCAGA ACCGCCTGTT CTCTCGCCTC GGCACCTGGG CGATGAAGGA TGATGCCGCG
CTGCGTGACA CGCTTGGCGC GATTGGCGTG GGCGGTTTGA CGCCTGAATT GCTCGACACC
GCGCGCACGC TCTTTGCCCG GGCGATTGAG GCGCCGGGCG GGCTGAAGAT CCAGACGATC
CATTCCTTCT GCGCCTCCGT CCTGCGGCGC TTTCCGCTGG AGGCACGCGT CAGCCCGGCC
TTCACGGAGA TTGATGAGCG CGTGCAGGCA CGGCTTTTGG CCGATCTGCT CGACGATATG
GCCGACACGG AGGCGGGCCG CGCTGCGCTC GACTTCATCG CGCCGTACCT GTCAGGCGAT
GACAGCGCGG TGGCTCTGGC GCGGTCCGTC GCGGGCAAGG CCGAGGCGCT GATGCCCGCC
GCCGATTGGG ACACGATCTG CGACTTCGCA GGCATTTCCC CGACACTGGC CGAGGATGAC
GTCTTCGCCA CCGCCCTGAC CGGAGACGAG GCGGACCTGT TTCAGATCCT GCGCACCCAT
CTTGATCCGA CCGTGAAGAC GCAGGTCAAA CTCGGACAGG ATCTGGCCGG TTTGGATCTG
GACACCCCGA CGCCTGCGAC CTTGAAAGAG CTGGAGCGGA TCTTCCTGTT TGGCCCTACC
GCGAAGACGC CCTTCACGCC CAAGATCGAC GGTATCGCCA GCGCCAAAGT GCGCACGACC
ATCGGCAACG ATATGGCTGC GATCAACGAT CTGGCGGAGC GGGTGGCCGA GGCCCGCACC
CTGCGCACCG GCCTTGAAAC CGCCCGCAAA ACCCACGCCC TGCACCAGTT TGCCGCCCGC
TTCCTTCCCG CCTATGCGCG CGCGAAAGAG GCGCGGGGGT GGCTCGACTT CGATGATCTG
ATCGACAAGA CGCGGGCGCT TTTGTCCGAC ACGAAGGTCG CGCAATGGGT TCTGTTCCGG
CTTGACGGCG GGATCGATCA CATTCTTGTA GATGAAGCGC AGGACACCGC CCCGCGCCAA
TGGGACATCG TCCAGCGTCT GGCTGAGGAC TTCGCAGCGG GGGAAGGCGC GCGCACGGAT
GTGCAACGCA CGATCTTTGT GGTCGGGGAC AAGAAGCAGT CGATCTATTC GTTCCAGGGC
GCGGATCCGT CAGAATTCGA CCGGATGCGG GCGCATTTCA AGGCGCGATT GGACGAGATC
GACGCGCCGT TCCAGGACGC CGCGCTGATC CACTCCTTCC GGTCCGCCGC GCCGATCCTG
TCGCTGGTGG ATCGTGTGGC GGCAAAGCTC GGTGCACCCG GCCTTGGTGA TCACATTGAA
CATAAAGCGT TTTTTGATGC AAAGCCGGGG CGTGTGGATC TGTGGCCCGC CATCGAACAG
GTGAAGGGCG GGGACAAGCC CGCCTGGAAC GACCCGCAGG ATCTGGTGAG CGAGGACCAC
CATTCCTCCG TGCTTGCGCA GACCGTCGCC GCTCAGATCG GTGCGATGGT GGCCGCGCCG
CCGATGATCG ATGTGGAGGG GAAGAGGCGG GCGCTGACGG CGGGCGATAT CCTGATCCTT
GTCCGCTCCC GCTCGCCATT GTTCCACAAG ATCATCGCCG AATTGAAGCG GGCGGATCTG
CCTGTGGCCG GGGTGGACCG GTCGCAACTG ACCTCTCCCC TTGCGGTCAA GGACCTGATG
GCGCTGTGCC GGTTTCTTGC GACGCCCGAA GATGACCTGT CGCTGGCCTG CGTCTTGCGC
TCCCCCCTCT GTGGTCTGTC TGAAGCGCAG CTTTATGACT TGGCCCATGG CCGTCCGGGT
TTCCTCTGGT CCGCAATGCG CGACCGGATC AGCGATTTTG AAGACGCCCA CGCAATTCTG
AAAGACCTGC GCGACAGTGC CGATTTCCTG AAACCCTACG ATCTGCTGGA ACGGGCCCTG
ATCCGCCATG ACGGACGGCG TCGCCTGATC GCCCGGCTGG GGCCGGAAGC CGAGGATGCG
GTGGACGCGA TGCTGGCCCA GGCGCTGGCA TATGAGGCGA CGGAAGTGCC ATCGCTGACG
GGGTTTGCGG GCTGGCTGGA CAGCGGTGAC GTGCAGGTCA AACGTGATCT CAGCCAGGCG
GAAGGGCAGA TCCGCGTCAT GACCGTGCAC GGGGCCAAGG GGTTGGAGGC GCCCGTCGTG
ATCCTACCCG ATTGCGCACA AAAGCAGGGG CGCGGGTCGT CTGTCAGCTT GCTGCAACCG
GACGGTGCGC CGCTGATCTG GGCCCCCGGC AAAGGCGATG AAGTGGACGC CGTCACCGAC
GCTGCAGACC TCAAGAAACA GCGGGAGGCA GAGGAAGCGA ACCGCCTTCT CTACGTCGCG
CTGACCCGGG CGGAGACCTG GTTGATCGTG GCGGCGTCCG GCCAGCTTGG CAAAGGCGAC
GACGCCAGCT GGTACAAGAT TGTCGCCGAC GCGGTGGCGG GGATGGAGGC CGCAGCCCTG
ACCGTGGAGG GGCTGGAGGG CACCGGGCTG CGGCTGCAAA CCGGCGATTG GGCGGAAGGC
GAACGGCCCG CACATGCCAC CAAGACCCGC GCGACCCTGC CCGATTGGGC CACCGCGCCT
GCGCCTGCGC CGGAGAAGGA CAAGCCCGCG CGCAGGCCCT CGGATCTGGG CGGGGCCAAG
GCGCTTCCGG GTATGGGCGA CGAGAGTGCG ACAGCCATGC AGCGCGGCAC CATCACGCAC
CTTTTGCTGG AACATCTGCC GCGGCTGCCC CAAGCCGCCT GGCCAGCCGC CGCGCCCGGG
ATTGCAGCGT TGGAAAGTGA CCTGTCGCCA GAGGCCCTCG CCCCGATGCT GGAGGAGGCC
ACGCGGGTTC TGACCGCACC GCATCTGACG CATGTCTTCA CGCAGGACAC GTTGGCAGAG
GTGGAGATTG CCGGCCATTC CCCCACCCTC AACGCCGATA TGATCGGCAT CATCGACCGC
CTGATCGTAA CACCCACGCG CGTCACCGCC GTGGATTTCA AGACCAACGC CACTGTGCCC
ACTGCGCCGG AAGACACCCC CGATGGCCTC CTGCGCCAGA TGGGGGCCTA TGCGGAGTTG
CTGCAACCGA TCTATCCCGA CCGCGACATC ACCACCGCGA TCCTGTGGTC CCGCACCGCC
ACTTTGATGG AGCTGCCACA CGATATCGTG TCTCAGGCGC TGAGACGCGC AACCAGTGCT
TGA
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| Protein sequence | MDDATRAQTR AADPATSTWL GANAGSGKTR VLTDRVARLL LDGVPPERIL CLTYTKAAAM
EMQNRLFSRL GTWAMKDDAA LRDTLGAIGV GGLTPELLDT ARTLFARAIE APGGLKIQTI
HSFCASVLRR FPLEARVSPA FTEIDERVQA RLLADLLDDM ADTEAGRAAL DFIAPYLSGD
DSAVALARSV AGKAEALMPA ADWDTICDFA GISPTLAEDD VFATALTGDE ADLFQILRTH
LDPTVKTQVK LGQDLAGLDL DTPTPATLKE LERIFLFGPT AKTPFTPKID GIASAKVRTT
IGNDMAAIND LAERVAEART LRTGLETARK THALHQFAAR FLPAYARAKE ARGWLDFDDL
IDKTRALLSD TKVAQWVLFR LDGGIDHILV DEAQDTAPRQ WDIVQRLAED FAAGEGARTD
VQRTIFVVGD KKQSIYSFQG ADPSEFDRMR AHFKARLDEI DAPFQDAALI HSFRSAAPIL
SLVDRVAAKL GAPGLGDHIE HKAFFDAKPG RVDLWPAIEQ VKGGDKPAWN DPQDLVSEDH
HSSVLAQTVA AQIGAMVAAP PMIDVEGKRR ALTAGDILIL VRSRSPLFHK IIAELKRADL
PVAGVDRSQL TSPLAVKDLM ALCRFLATPE DDLSLACVLR SPLCGLSEAQ LYDLAHGRPG
FLWSAMRDRI SDFEDAHAIL KDLRDSADFL KPYDLLERAL IRHDGRRRLI ARLGPEAEDA
VDAMLAQALA YEATEVPSLT GFAGWLDSGD VQVKRDLSQA EGQIRVMTVH GAKGLEAPVV
ILPDCAQKQG RGSSVSLLQP DGAPLIWAPG KGDEVDAVTD AADLKKQREA EEANRLLYVA
LTRAETWLIV AASGQLGKGD DASWYKIVAD AVAGMEAAAL TVEGLEGTGL RLQTGDWAEG
ERPAHATKTR ATLPDWATAP APAPEKDKPA RRPSDLGGAK ALPGMGDESA TAMQRGTITH
LLLEHLPRLP QAAWPAAAPG IAALESDLSP EALAPMLEEA TRVLTAPHLT HVFTQDTLAE
VEIAGHSPTL NADMIGIIDR LIVTPTRVTA VDFKTNATVP TAPEDTPDGL LRQMGAYAEL
LQPIYPDRDI TTAILWSRTA TLMELPHDIV SQALRRATSA
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