| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4065 |
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| Symbol | |
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| ID | 3936553 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 4169734 |
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| End bp | 4172694 |
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| Gene Length | 2961 bp |
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| Protein Length | 986 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637906450 |
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| Product | hypothetical protein |
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| Protein accession | YP_512007 |
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| Protein GI | 89056556 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3893] Inactivated superfamily I helicase |
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| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.633062 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.255669 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTGACA CGTCCACCAC CGCGCGCGTC TTCGCCACGC CTTTGGGTGT CGACTTTTGC
GCCGCGCTCA TCGACGGGCT TGATCGGGCG CTGAGCGGCC AAGGCCCCGA GGCGCTCGCG
CGGGTGGAGA TCCACGTCGC CAATGCCCGG ATGCAGCGCC GGTTGCAGAC GCTCTACATC
CGGCGCGGGC CAGGGCTTTT GCCCCGCATC CGGCCCGTCC TGTCGCTCTC CGAGACGGCG
GATCTGGAGG GATTGCCCCC TGCCATGTCA CCGCTGGCCC TGCGACTGGA GCTGGCGCAA
CTGATCGGCA AACTGATCGA CGCCAACCCT GATCTTGCAC CCCGCGCGGC CCTTTATGAT
CTTGCTGACA GCCTTGCGGA TTTCATGGGC GAAATGGTGG AGGAAGGGGT CACGCCCGAT
ACCATCGCGA GTCTCGATAT GGGCGAGCAT TCCGAGCATT GGACCCGCGC ACGGGATTTC
CTCGGCATCG CACAGCAGGT CATCGCGACG GGCGACCGCC CCACGCCGGA AGGGCGACAG
GCCGCTGTCG TTGATCGCCT CATTGCTCAG TGGCGGATCA ACCCACCGAC CCATCCGGTG
ATCGTCGCAG GCTCCACCGG CTCGCGGCGC GCGACCTTTC GGCTGATGGA GGCGGTGGCG
CACTTGCCCC AGGGCGCGGT GATCCTGCCC GGCATCGACC GGGACATGCC CGGTGCCATC
TGGCGCGGGC TGCTGGACGG GCGGCGCAGT GGTCTGGCGG GGGAGGATCA CCCGCAATAC
CGGCTCGCCA AACTGTTGGA TGCGGTGGGG ATGGACCCGG CGACGGTACC GCTCTGGGGC
CGTGCCACGC CTGCCGTTCC GGCTCGCAAT GCCGTCGTCT CCCTCGCCCT GCGCCCCGCG
CCGGTGACCA ACCAATGGCG GACGGAGGGT CCAAAACTGA CCGATGTAAG CGGGGCCATG
GCAGGCGTCA CCCTGCTGGA GGCGCCGTCG CCGCAGATGG AGGCCACCGC CATAGCATTG
CGGATGCGCA AGGGCGTTGC CGACGGTCAG CGCGTGGCGC TTGTCACGCC CGACCGCAGG
CTGGCCCGCA AGGTGACGGC ACAATTGGAC CGCTGGCGCA TCTTGCCCGA TGACAGCGCG
GGGCAGGTGT TGGCCCAGAC CGCGCCGGGC CGCTTCCTGC GCCAGGTCGC CGAAATGCTA
TGCGGTCCCG TCACCGCGGA GGCGATGGTC GCGCTGTTGA AAAACCCGCT CTGCAATTCA
GGCCCCGACC GGGGCAATCA TCTGCGCCGC ACGGTGGACC TTGAATTGCA ACTCCTGCGC
AAGGGCCTCA CCTTTCCCAC CCGCGCAGCC CTGATGGACT GGGCCGCAGC GCGCAAGGAT
GACGTCGACA CGACGGCTTG GGTGACCTGG CTGGCAGATC ACCTGTTGGA ACCGGTGGAA
ACGGCCGCCC TGCCGTTGGC CGAGCGCGTC GCGCTGCACA AATCCCGCGC AGATGCGCTG
GCGGCGGGCG TCGATCAGAC GACCACGCAC GAATTGTACA AGCAGGAACC CGGCGAAAAA
GCAGAGACCC TTCTGCGAGA ACTTCAGGCC GTGGCCGATA CGGGCGGCGC CATGTCCGCC
CGCGATTACG CTGATTTCTT CACCGCGCTG GCCCATGACC GGGAGGTTCG ATTTGCCCTG
CGCCCCCATG CCGATGTCCT GATCTGGGGC ACGCAGGAGG CCCGCGTTCA GGGCGCGGAT
GTCACCATCC TCGCGGGTCT GAACGAGGGG ACCTGGCCCC AGGCTGCCAG CGCTGATCCG
TGGCTGAACC GCCCGCTGCG CGCCGATGCC GGGCTGCGTC TGCCGGACCG GGTCATCGGT
CTGTCCGCCC ATGATTTCCA GCAGGGCATC GCTGGGGGTG AGGTTTGGCT GAGCCGCGCC
AAGCGCGATG ATGAGACCGA TACCGTCCCG GCCCGTTGGC TAAACCGTCT GGTCAATCTT
CTGGGCGGCG CAAGCGATGC ATCCAGCCAG GCGCTGACCG ATATGCAAGC GCGGGGGGCG
GAGTGGCTGA CGCTGGCCGA CACGCTCTCC ACCCCCGATG CCCGCGAAAC ACCTGCGCCC
CGACCCGCCC CCGCGCCGCA GAATATCACC CGCCTCACCG CCCTGTCCGT CACGGATATC
GAGCGGTTGA TCCGCGATCC CTATGCCATT TACGCGGCCC GAATGCTCAA CCTGCGCGCG
CTCGACCCTC TCCGCGCCAG CCCCGACGCC CGCCTGCGCG GCACCGTCTT CCACCGGATC
ATGGAGCAGT TCATCACCGC CACGCCCACC GACCTGCCCG AGGATGCGGG TCAGGTGTTC
ATGGGTCTAG CCGGGGACAT TCTTGCACAA GATGCCCCCT GGCCCGCCGC CCGCCATTTG
TGGCGGCATC GGTTGCAAAC AATCCTGCCC TGGTATCTGG CGCAGGAGGC GTCGTTTCGC
GCGTTAGCGG AGCCTTGGGT GCTAGAGGAG CGCAAGGACT GGCACGTCCC CGGCCTCGGC
ATGACCCTGA GCGGCATCGC GGACCGGATC GACAGCCTGC CCGATGGACG CGTGGCGATT
TATGACTACA AGACCGGCAA TCTGCCCACC GACAGGATGG AAATCGCCTA TAACAAGCAG
CTGCTTTTGC TGGCCCTGAT GGGGCGCGGT GGGGCGTTTG CCGACCGCCC GCTGGATGTG
GCGCGGCTGG CCTATGTGGG CCTTGGCACC AAGCCAGAGA TCCGTGCGCA GGACTTCGAT
GACGGCCTGC TGGACGAGAC GTTCAAAGGG CTGCGGGAGC TGATTACCCA TTACCGCCAA
CCCCTTGTGG GGTTCCCGTC GCGCCGTTCT CCGAAGCAAA CCACCTATGC GGGCGACTAT
GATCATCTGG CGCGGTTGGG CGAATGGGAT GAGACGATGG ACGCCGTGGT GATCCCGGTT
GGGGGGCGCG CCGATGGATG A
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| Protein sequence | MFDTSTTARV FATPLGVDFC AALIDGLDRA LSGQGPEALA RVEIHVANAR MQRRLQTLYI
RRGPGLLPRI RPVLSLSETA DLEGLPPAMS PLALRLELAQ LIGKLIDANP DLAPRAALYD
LADSLADFMG EMVEEGVTPD TIASLDMGEH SEHWTRARDF LGIAQQVIAT GDRPTPEGRQ
AAVVDRLIAQ WRINPPTHPV IVAGSTGSRR ATFRLMEAVA HLPQGAVILP GIDRDMPGAI
WRGLLDGRRS GLAGEDHPQY RLAKLLDAVG MDPATVPLWG RATPAVPARN AVVSLALRPA
PVTNQWRTEG PKLTDVSGAM AGVTLLEAPS PQMEATAIAL RMRKGVADGQ RVALVTPDRR
LARKVTAQLD RWRILPDDSA GQVLAQTAPG RFLRQVAEML CGPVTAEAMV ALLKNPLCNS
GPDRGNHLRR TVDLELQLLR KGLTFPTRAA LMDWAAARKD DVDTTAWVTW LADHLLEPVE
TAALPLAERV ALHKSRADAL AAGVDQTTTH ELYKQEPGEK AETLLRELQA VADTGGAMSA
RDYADFFTAL AHDREVRFAL RPHADVLIWG TQEARVQGAD VTILAGLNEG TWPQAASADP
WLNRPLRADA GLRLPDRVIG LSAHDFQQGI AGGEVWLSRA KRDDETDTVP ARWLNRLVNL
LGGASDASSQ ALTDMQARGA EWLTLADTLS TPDARETPAP RPAPAPQNIT RLTALSVTDI
ERLIRDPYAI YAARMLNLRA LDPLRASPDA RLRGTVFHRI MEQFITATPT DLPEDAGQVF
MGLAGDILAQ DAPWPAARHL WRHRLQTILP WYLAQEASFR ALAEPWVLEE RKDWHVPGLG
MTLSGIADRI DSLPDGRVAI YDYKTGNLPT DRMEIAYNKQ LLLLALMGRG GAFADRPLDV
ARLAYVGLGT KPEIRAQDFD DGLLDETFKG LRELITHYRQ PLVGFPSRRS PKQTTYAGDY
DHLARLGEWD ETMDAVVIPV GGRADG
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