| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_4024 |
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| Symbol | |
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| ID | 3936512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 4126524 |
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| End bp | 4127177 |
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| Gene Length | 654 bp |
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| Protein Length | 217 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637906409 |
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| Product | ribosomal large subunit pseudouridine synthase A |
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| Protein accession | YP_511966 |
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| Protein GI | 89056515 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAGCGTTG ATTTCGTCTA CGCCCCGCCA ACGGACCCCC TGGACATCAT CCACGAAGAC
CATGACCTGC TGTTGGTCAA CAAACCCGCC GGGCTGCTGT CGGTGCCCGG CAAGGGCGAG
CACCTCTCCG ATTGCCTGAT CGCCCGCCTC AAGATCGCCT TTCCCGAGGT GCTTCTGGTC
CACCGCCTCG ACATGGACAC GTCCGGCGTC ATGGTCTTCG CGCGCACCCC CCACGCGCAA
CGCCACCTGG GCCTGCAATT TGAGAAGCGC CATACCAAGA AAGCCTATGT CGCCCGTGTC
TGGGGGGAGG TCACGGACAA GGATGGTCAC ATCGACCTGC CGCTGATCGT CGACTGGCCC
AACCGCCCCC TGCAACATGT GAACCATGAA ACCGGCAAGC CCGCGCAAAC CGATTGGCGG
CGCATCCGGG TGGAAGACGG CACAACCCGC ATGCGCCTCT TCCCCAAGAC CGGGCGATCC
CACCAATTGC GCGTGCATAT GCTGGCCATC GGCCACCCAA TCCTCGGCGA TCCGTTCTAT
GCCACAGGCC CCGCCCTCGC CTTCCCGCGC CTCATGCTCC ACGCCGAAAG TCTCAAACTT
CGCCACCCTG ACGGCGGCAT CGGCATGACC TTCCGCGCCC GGGTGCCGTT CTAG
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| Protein sequence | MSVDFVYAPP TDPLDIIHED HDLLLVNKPA GLLSVPGKGE HLSDCLIARL KIAFPEVLLV
HRLDMDTSGV MVFARTPHAQ RHLGLQFEKR HTKKAYVARV WGEVTDKDGH IDLPLIVDWP
NRPLQHVNHE TGKPAQTDWR RIRVEDGTTR MRLFPKTGRS HQLRVHMLAI GHPILGDPFY
ATGPALAFPR LMLHAESLKL RHPDGGIGMT FRARVPF
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