| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3999 |
|---|
| Symbol | |
|---|
| ID | 3936487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 4102788 |
|---|
| End bp | 4104494 |
|---|
| Gene Length | 1707 bp |
|---|
| Protein Length | 568 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637906384 |
|---|
| Product | peptidoglycan binding domain-containing protein |
|---|
| Protein accession | YP_511941 |
|---|
| Protein GI | 89056490 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.121283 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCTTCC GCCCCCTCGC CATCGCCGCC ACCCTATGCG GCGCGCTGAC AGCCCCGGCC
GCCCAGGCCG ACACGGCGCT GCTTCTGGTC AATGACCGGT ATGCCCACGG CCAAAACCTG
CGCGATGCCC GCCCGGTGGA GCAATTGCGC GCCGAGTTGC AGGCGGCTGG CTTTGACGTG
ATCACCGTGT CCGATGGCGA TGGCGCGGAT CTGCGTGACG GTCTCGCACA GCTGATGGAG
GCCGAAGAGC AGGAGCGGAT CGTGATCGCC GCCGTGGGGC ATTTCGTGCG CGCCCGCGCC
GACAGCTGGC TGTTGGGAAC ACGCGCCGAT GCGCCGTCGC TGGCGAGTGT AGGGGGCGAT
GGCCTCAGCA TCTCGGTCCT GATGGAGGTT GCGGCCAGCG CGCCGGGGCA GGCGATTGTC
ATGCTGGGGC TGGAGCGCCG CAGAATGACG CTCGGTGCGG GCGTCAGCGC GGGGATCGGG
CATATCGATG CGCCCCAGGG CGTCACCGTT CTGGCCGGTG GCCCCGATGA TCTGGCCGCC
TTCACCACGT CCTATCTTCT GGTGCCCGGC ACTGACCTGG ACGCGGCGGT GGGCGCGGCA
GGCAATCTGC GGGCGTTCGG CTTTCTCTCC CCCGCGGTGC CGTTCATCCC CGATGCGGTC
GCTGAACCCG CCGCATCCCA GCCGCCCGTG ACTGCGCCCG CCCCGACCCA ACCCGGCGCC
GATGAGACCG CCCTTTGGAA TGCGGCGGAG GAGCTTGATA CGGTGGGGGC CTATCGCGCT
TATCTGAACC GGTATCCCGA CGGCTTCTTC GCCCTTGATG CGCGCGCCCG CGTGGAGGCT
GTCGAGAACG ACCCGACCGC CCTTGCCGTT GCGGCAGAGG AAGCGCTGGC CCTCAACCGC
GATCAGCGTC AGCAGATCCA GCGCAGCCTT TCGATTCTGG ATTTTGACAC GCGCGGCATC
GACGGGATTT TCGGCACCGG CACGCGAAAT GCGATCCGGG GGTGGCAGAC CTCCCGTGGG
TTTGCGGTGA CCGGCTACAT TGATGGGCCA CAGGTCAATA CGCTGGGTCA GCAAGCCGCC
GTCCGTGCCG CAGAGTTGGA GGAGGCCGCC CGCGTCGCGC GGGAAGCACA GGAGCGGGCG
GACCGCGCCT ATTGGCAGGT CACCGGGCAG GGCGCATCCG AGGACGGCTT GCGTGCCTAT
CTTGGGCAAT ACCCCGATGG CGTCTTCGCG GAACAGGCCG AGCAGCGGCT TGACGAGATC
GAACGTGCGG CCCGCGCCCA GGCAGAGGCC CGCGACCGTG CCGATTGGGA TGTGGCCCGC
GCCGCCGATA CGGTTCCCGC CTTGCAAGCC TACCTCGATG ACAACCCCAA CGGGGCCTTT
GGGGATCAGG CGCGGGCGCG GATTGCTCAG CTGACCGGCG CAAACGGGGG CTTTACGCCG
CAACAGATCG CGCAGCTGGA AGCGCGTGAA GCGCAACTGA ACCTGCCGCC CGTCACGCGG
TCCCTGGTGG AGCAGCGCCT GACGGTTCTG GGCCTTGATC CCGGGCGGGT GGATGGCCGG
TTCGACGACA GCACCCGCCG CGCCGTGCGC CGCTATCAGC AGGCGCGGGG GATGGACGTG
ACGGGCTATC TGGATCAACA AACGGTCGTT CGTCTGCTGG CGGAAACCGT TGGCGGCATC
CTGCGCATAA ATGGAATTGT CGATTGA
|
|---|
| Protein sequence | MSFRPLAIAA TLCGALTAPA AQADTALLLV NDRYAHGQNL RDARPVEQLR AELQAAGFDV
ITVSDGDGAD LRDGLAQLME AEEQERIVIA AVGHFVRARA DSWLLGTRAD APSLASVGGD
GLSISVLMEV AASAPGQAIV MLGLERRRMT LGAGVSAGIG HIDAPQGVTV LAGGPDDLAA
FTTSYLLVPG TDLDAAVGAA GNLRAFGFLS PAVPFIPDAV AEPAASQPPV TAPAPTQPGA
DETALWNAAE ELDTVGAYRA YLNRYPDGFF ALDARARVEA VENDPTALAV AAEEALALNR
DQRQQIQRSL SILDFDTRGI DGIFGTGTRN AIRGWQTSRG FAVTGYIDGP QVNTLGQQAA
VRAAELEEAA RVAREAQERA DRAYWQVTGQ GASEDGLRAY LGQYPDGVFA EQAEQRLDEI
ERAARAQAEA RDRADWDVAR AADTVPALQA YLDDNPNGAF GDQARARIAQ LTGANGGFTP
QQIAQLEARE AQLNLPPVTR SLVEQRLTVL GLDPGRVDGR FDDSTRRAVR RYQQARGMDV
TGYLDQQTVV RLLAETVGGI LRINGIVD
|
|---|
| |