| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3974 |
|---|
| Symbol | |
|---|
| ID | 3936455 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 4071006 |
|---|
| End bp | 4074215 |
|---|
| Gene Length | 3210 bp |
|---|
| Protein Length | 1069 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637906352 |
|---|
| Product | reductive dehalogenase |
|---|
| Protein accession | YP_511916 |
|---|
| Protein GI | 89056465 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1018] Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 |
|---|
| TIGRFAM ID | [TIGR02486] reductive dehalogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCTAC GCTTTTTCTC GGATAAGAAC CGACCTGTTC ACATGGGTCG CTATCCGACC
GAGCGGCTGT CGCGGACCGC GTCCATGCCG GACCTTGCCG CCGTGCCCCC GTCACAGCAC
TTGTCGTTTG CGCGCCCCGA TGATGCCCGG TCCATCGTCA ACGCGATGCG AGAGCATCAG
GCGATGCTTG ACGCGATCCG GGATGGGTTG GTCAACAAGG CCGTGGCCGA GGCCCCGACA
GGCCCCCAGG ACCGGGCAGA TCATCTCAAG GCGTTCGGAT ATTTCTCAGA CGCGGCCTTG
GTGGGCGTGT GCAGGCTGCC TGAGGGGGCG GTTCTGGCAG AGCCTCACGT GAACCCGGAT
GTGGGCCGCC TCGCCAACGA TCTGAAAACA CGACAGACCA AAACGCTGGC GGCGGGCATC
GACATGATCA TGTCGGATCT CAAGGACAGC ATGGACGCAC CGCCCACGGG CATCGACGGT
CACACCCACG CGCTGGTCTT CCTCTACGAG AACCCGCGCG CGCCGGACAT GGACGAACCT
GGCACCGGAT GGATGGCGGA TGCCCAGGCC CACCGCGCGG GTCTACTGGC CGCTGAGGCC
GCGATTGTCC TGGCCAACTA CCTCAGGCTT CTGGGCTATC CGTCGCGCGG GCACACGGTG
TCCAGCTCGG ACGTGGACCT CAATAAACTG GCCGTGGCCG CCGGTCTCGC GACGGTCGAG
GATGGCACGC TGCATCACCC GTATATCGGC ACGCGGTTCG GCCTCGCCGC CGTTACCACG
ACGTTTGAGA TCGCGCCTGA TTTGCCGCTC ACGCCCCTGG ACCAACAGCC GAAATCCGCC
TTTGGCATCG GCTGGAGGCT TGGCACATCC TCCGCCAAAA ACGCCATGAA CGCAGAGCCC
TACGCCAAGC GACGCTTTGT CGATGGCGCC CATCCGTTCG AGACGCTCAA GCGTGTCGAC
ACGCCCACCA CCTACATTGA CGAGCCCAAT GTTGCCCGCG TCCCCAAACG CGCCGACATG
TTCGCACGTG CCCAATTCGG GGACATGGGC AAGAAGATGC AGGAGGGCGC GAAAGGCGGC
CATTATGTGC GCAAGGCCGC GCCCTCCATG GCGCAGCGGC GGGCATTGGG GGCGTTTGTG
CTGCTGCAGG ATGGGGAGAC CGCGGCAGAG CAGGTGCAGT TGGACCCGCA GGAGGCGGCG
GATTTGGTGA AAGCCACCAG CTACTGGCTT GGCGTTGACG CGGTGGGCAT TGCGCGTTGC
CCGGACTGGG CGTGGTACAG TCATGACGCG CGTGGTGAGA GGATTGATCC GCCCCACGAC
CAGTCGATCA ACATGATCAT CGACCAGGGC TATGAGACGA TGGAGGGGTC CAGCGGCGAT
GACTGGATCG CGGTGGCGCA ATCAATGCGT GCCTACCTGC GGTTTTCCCT GATTGGCGGC
GTCATTGCCA AACAGATCCG TAACCTCGGC TACAAGGCCA AGGCCCACAC CGTGATGGAT
GGGGAGGTGT TGCAGCCGCC GCTTTTGCTG CTGTCGGGCT TGGGGGAAGT CAGCCGGATC
GGTGAGGTCA TCCTCAACCC GTTCCTTGGC CCTCGCCTGA AATCCGGCAC CGTCACAACA
GATTTGCCAA TGGCCCATGA CAAGCCCATC GATTTCGGTC TGCAAAGGTT TTGCGACAGC
TGCAACAAAT GCGCGCGGGA ATGTCCCTCG GGCGCGATCA CCGCAGGCCC GAAGCTGATG
TTCAATGGCT ATGAGATCTG GAAATCCGAT AGCCAAAAAT GCGCAACCTA CCGCGTCACG
ACACCAGGTG GCGCGATGTG CGGGCGCTGC ATGAAGACCT GCCCCTGGAA CCTCGAAGGG
CTCTTCAAGG AAAAGCCCTT CCGGTGGGCC GCGATGAACG TGCCGCAGCT GGCACCCGTC
CTGGCAAAAC TCGATGACGT GGTGGAAAAT GGCACCCTCA ACCCTGTGAA GAAGTGGTGG
TGGGATCTGG AGATGGAAGA GGACGGCGGC TATCGCCCCA CCCAGCAGCC GGTCAACACG
CGCGCCCTGC AAAAGGACCT CGATTTGCGG TACGAGGATC AGACCCTCGC CGTCTATCCG
GCACCGCTGG CACCCCATCC CCACCCCTAT CCGTTCAACA TGGATCGGGA AGCGGGGATC
GAAGCCTATC AGGCGATGGT CACGGCCAAG GAATACAAGT CGCTGCTGGA GCGTGATGAA
AAGGGCCATC TGCACATCTA CGCCGCCGAG GGCGAAAGCC CGGTCATCCA GGTGGAGATC
ACCCGCGCGG ATGTCAGCGC CGAGGGGGTC AGCATCTATG AGTTCACGCC CGTAGATGGC
GGCGACTTGC CCGAATGGAG CGCAGGCGCG CATCTTGATA TCGTCGTCGC CCCGGAGTTT
CTGCGCCAAT ACTCGATGTC CGGCGACCCG GCAGATCGGT CGAAATACCA GATCGCCGTG
TTGAAGGAGG ATGAGGGGCG CGGCGGCTCA AAGTTGCTGC ACCGCATTTT CTCCACCGGG
CGGCGGATCT TCATATCGCG GCCCATCAAC CATTTCCCGC TGAATGCTGG TGCGAGCAAC
TCGGTCCTCA TGGGGGGTGG CATCGGTATC ACCCCGATGG TGGCAATGGC CCATGAACTA
CATGCCCAGG GGCGCGCGTT TACGATGCAT TATTCTGGTC GATCCCGCGC GCAGATGGGG
TTGCTTGAGG AGATCATGGG CTTCCCATGG GCCGACCGCG TGCAGCTGCA CGTGACAGAC
GAAGGCTCGC GTGCGGATCT GGCGACGATC CTGGGCGGCT ATCAGCCCGG CTGGCACGTC
TACACCTGCG GCGCGGATCG CTACATGTCC GCGGTGATGG AGGCGGCAGA GGCGGTAGGG
TTCCCGGAGG ACGCCCGGCA TCTGGAGTAT TTCTCCGTCC CCGAACAGCC CGACTACGTG
AACCACGATT TCACGCTGAA GCTGGTGAGG TCCGGGCAGA CTCTGTCGAT ACCCGCTGAC
AAAACCGCCA CCGACGTGCT GACCGAGAAT GGCATTCACG TGGACGTCAA ATGCTCGGAC
GGGATCTGCG GTGTGTGCAA ATGCGGCTTG ATTTCCGGCG ACGTGGAGCA CCGGGATTTC
GTCCTCTCCA AGGCGCAGCG CGAAGACGGG ATCATCCTGT GCCAAAGCCG CGCAGCAGAG
GCGGGCGGCG TGATTGAGGT GGATCTCTAG
|
|---|
| Protein sequence | MTLRFFSDKN RPVHMGRYPT ERLSRTASMP DLAAVPPSQH LSFARPDDAR SIVNAMREHQ
AMLDAIRDGL VNKAVAEAPT GPQDRADHLK AFGYFSDAAL VGVCRLPEGA VLAEPHVNPD
VGRLANDLKT RQTKTLAAGI DMIMSDLKDS MDAPPTGIDG HTHALVFLYE NPRAPDMDEP
GTGWMADAQA HRAGLLAAEA AIVLANYLRL LGYPSRGHTV SSSDVDLNKL AVAAGLATVE
DGTLHHPYIG TRFGLAAVTT TFEIAPDLPL TPLDQQPKSA FGIGWRLGTS SAKNAMNAEP
YAKRRFVDGA HPFETLKRVD TPTTYIDEPN VARVPKRADM FARAQFGDMG KKMQEGAKGG
HYVRKAAPSM AQRRALGAFV LLQDGETAAE QVQLDPQEAA DLVKATSYWL GVDAVGIARC
PDWAWYSHDA RGERIDPPHD QSINMIIDQG YETMEGSSGD DWIAVAQSMR AYLRFSLIGG
VIAKQIRNLG YKAKAHTVMD GEVLQPPLLL LSGLGEVSRI GEVILNPFLG PRLKSGTVTT
DLPMAHDKPI DFGLQRFCDS CNKCARECPS GAITAGPKLM FNGYEIWKSD SQKCATYRVT
TPGGAMCGRC MKTCPWNLEG LFKEKPFRWA AMNVPQLAPV LAKLDDVVEN GTLNPVKKWW
WDLEMEEDGG YRPTQQPVNT RALQKDLDLR YEDQTLAVYP APLAPHPHPY PFNMDREAGI
EAYQAMVTAK EYKSLLERDE KGHLHIYAAE GESPVIQVEI TRADVSAEGV SIYEFTPVDG
GDLPEWSAGA HLDIVVAPEF LRQYSMSGDP ADRSKYQIAV LKEDEGRGGS KLLHRIFSTG
RRIFISRPIN HFPLNAGASN SVLMGGGIGI TPMVAMAHEL HAQGRAFTMH YSGRSRAQMG
LLEEIMGFPW ADRVQLHVTD EGSRADLATI LGGYQPGWHV YTCGADRYMS AVMEAAEAVG
FPEDARHLEY FSVPEQPDYV NHDFTLKLVR SGQTLSIPAD KTATDVLTEN GIHVDVKCSD
GICGVCKCGL ISGDVEHRDF VLSKAQREDG IILCQSRAAE AGGVIEVDL
|
|---|
| |