| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3960 |
|---|
| Symbol | |
|---|
| ID | 3936441 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 4058535 |
|---|
| End bp | 4059290 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637906338 |
|---|
| Product | amino acid ABC transporter permease |
|---|
| Protein accession | YP_511902 |
|---|
| Protein GI | 89056451 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
|---|
| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.393208 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGTGC TGATCTATGC GGGCGTCATG GCCGCGATCA TCTACGGTTC CTACACAGGC
GCCCAGAACA TGGGCTACAA TTGGCAATGG TCGCGCGTGC CGCAATTCCT GTGGACCTTC
ACCGACGACG GCTTCCAACT GGGAGAGATC TTTCAAGGCC TGGGCGTGAC CCTGCAACTC
TCCGCCACGG CGTTTGCTTT GGCGACTGTT CTGGGCCTGC TGGTGGCCCT GCTGCGCCTG
TCCGATCTGG TGATCGGCTC CGCCGTTGCG GTCGCATTTC TGGAGTTCAA CCGCAACATC
CCGCTGCTGG TCCTGCTCTA CCTGTTCTAT TACGTCCTCG GCCCCATTTT CGGGTTCGAC
CGCTACTGGG CGTCCGTCCT GACCCTCGCC GTCTTCCACT CCGTCCTGAT CTCGGAAATC
TTCCGCGCGG GCATCAACGC GGTCGCGACA GGCCAGTGGG AAGCCGCGAA ATCCATCGGG
ATGAGCCAGG GCCAGACCTA CCGCTACATC ATCCTGCCGC AATCAGTGCG CTTCATGTTG
CCGCCGATGT TTGGCGAGGT CGTCCACCTG ATCAAATCCT CGGCCATCGT CTCCGTCATC
GCCGTGGCGG AACTGACGAC GATTGGCCGT AACATCATCT CGGACACGTT CCTGAGCTTC
GAGATCTGGT TCACCGTGGC ATTAGTCTAC ATGGCCATCA CGTTGATCCT GTCCGTTGGC
GTATCGTTTC TGGAACGGCG ATATGCCCAA GATTAA
|
|---|
| Protein sequence | MSVLIYAGVM AAIIYGSYTG AQNMGYNWQW SRVPQFLWTF TDDGFQLGEI FQGLGVTLQL
SATAFALATV LGLLVALLRL SDLVIGSAVA VAFLEFNRNI PLLVLLYLFY YVLGPIFGFD
RYWASVLTLA VFHSVLISEI FRAGINAVAT GQWEAAKSIG MSQGQTYRYI ILPQSVRFML
PPMFGEVVHL IKSSAIVSVI AVAELTTIGR NIISDTFLSF EIWFTVALVY MAITLILSVG
VSFLERRYAQ D
|
|---|
| |