| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3942 |
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| Symbol | |
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| ID | 3936423 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 4041122 |
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| End bp | 4042558 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637906320 |
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| Product | binding-protein-dependent transport systems inner membrane component |
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| Protein accession | YP_511884 |
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| Protein GI | 89056433 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0395] ABC-type sugar transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.413253 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCCG TGTGGGGTTT CCTGTCGCGC ACACAAGGGC GCGGACGCCT CAGCTGGACC
GACTGGCTGT CCTACGCCTA CCTGATCTTC GGCTTCCTGA TTATTCTGGT GCCGGTGGTC
TGGCTTGGCC TGAACTCGGT CAAATCGCAG TTCCAGATTG AATCCCAGGA CCTGTCCCTG
CTGCCCGGAG ACTTCGACCG CGTCGCCCGT GCCACGGTCA ACGGCCCCGA TGGGCGCGAG
ATTTCCATCA TCGCGGATCT GCCGCTTTGG GTGTTGAATT GGTCCGACCT GTCCGAGGCG
GAGCAAGAGG GCAGGGACGT TACCGCCTAC CTGGAGGGCT TCGAAGGCAA TGCCCTTTAC
GCCCTCCGCT CCCATCTCGG CCAAGTCAGC AACGCGGCGA GGACGCTTAT AGCGGAGGAG
CGGCTGCCCG AATGGCTGAA CCGCTACGCC GCGTTAACCC CGCAGGCGCG GGAAGCGTTT
GATCTGGATG CTGTGGTCGA AGCGCTGGAC GCGGATCAAC AACGCCTGCT CCTCGAATAT
CTGGGCGTGG AGCCCTACCA GCCCAACCGC ATCGTCACCC AGGTCCTCGT CACCGCGCCG
CACCCGGACA CGGGCGAGGT CATGGAATGG GCAATCCCCA ACCCCAACGC CGCGTCGGAG
TTCCTCCCCG GTCGTGCCGT CAACGGCGAT GCGTCGCAAG TCGTGCGCCT GCCTGCGGAA
AGCGTCACCG CCAACCGCAC CATCTCGCCC GCCTGGGGCA ATTATTCAGA GCCGCTGACC
GGCACCGCTT ACGGCGTCAA CGTGGACTTC GCGACCTGCA TCACCAACTC CGTCCTTGTG
ACAGTGATCG CGACTCTAAT GACGCTGCTG ATCAACTCCA TGGCCGCCTT CGCCCTGTCG
AAATACACGT TCAAAGGCCA AACGCTGTTC CTTGTCGTAA TCCTCGCGAC GCTGATGGTG
CCCGCAACGA TCACGCTCGT AGGGGTCTTC AAGGCGATCA ACGCCACCGG GCTTTCCGGG
TCTATCTGGG GCGTCATCAT CCCCGGCGCG GCCACGCCAG CAGGCGTCTT CCTGCTGCGC
CAATACATGC TGACGATCCC GGATGAATTG CTCGAAGCCG CGCGGATGGA TTCTGCGTCC
GAATGGAAGG TCTACTGGCG CATCGTCCTG CCCCTCGCGC TGCCCGCCAT CGCGGCGCTT
GGCATCCTGT CGGTCATCTG GCGCTGGAAT GACCTGATTA TTCCCATGGT CGCCATCGCC
ACGAATACCG AGGCCTACAC GATCCAATTG TGCCTGCTGG AATTCCGGGG CGAACATATC
AGCCAGGAAC ATTACCGCCT CGCGATGACT GTTGTCAGCC TGATCCCCAC GACGCTCGTC
TTCGTGTTCC TGCAGAAATA TATCACCACC GGCATCGCGA ATACCGGCAT GAAATGA
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| Protein sequence | MSAVWGFLSR TQGRGRLSWT DWLSYAYLIF GFLIILVPVV WLGLNSVKSQ FQIESQDLSL
LPGDFDRVAR ATVNGPDGRE ISIIADLPLW VLNWSDLSEA EQEGRDVTAY LEGFEGNALY
ALRSHLGQVS NAARTLIAEE RLPEWLNRYA ALTPQAREAF DLDAVVEALD ADQQRLLLEY
LGVEPYQPNR IVTQVLVTAP HPDTGEVMEW AIPNPNAASE FLPGRAVNGD ASQVVRLPAE
SVTANRTISP AWGNYSEPLT GTAYGVNVDF ATCITNSVLV TVIATLMTLL INSMAAFALS
KYTFKGQTLF LVVILATLMV PATITLVGVF KAINATGLSG SIWGVIIPGA ATPAGVFLLR
QYMLTIPDEL LEAARMDSAS EWKVYWRIVL PLALPAIAAL GILSVIWRWN DLIIPMVAIA
TNTEAYTIQL CLLEFRGEHI SQEHYRLAMT VVSLIPTTLV FVFLQKYITT GIANTGMK
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