Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3935 |
Symbol | |
ID | 3936416 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 4032565 |
End bp | 4033827 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 637906313 |
Product | extracellular solute-binding protein |
Protein accession | YP_511877 |
Protein GI | 89056426 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.0774395 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.611638 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCATGA TGAAAAAACT ATCTACGGGC GCAGCCGTGC TGGCCCTGTC AACGACGGCG ATCACGTCTG TTGCATCGGC ACAGGACGTG GAGGTTCTGC ACTGGTGGAC GTCCGGCGGC GAAGCGGCTG CCCTGAACGT GTTGCGCGAA GATCTTGCCG GGGGTGGCAT CGGTTGGACC GACATGCCAG TCGCTGGCGG CGGTGGCTCT GACGCCATGA CCGTCCTGCG CGCCCGCGTC ACCGCAGGCG ACCCGCCCAC CGCCGTGCAG ATGCTTGGCT TCTCGATTCA GGACTGGGCC GCCGAAGGCG CGCTGGCAGA CCTGAACGCG CTGGCGGAAG AGCAGAACTG GAATGAAGTG GTGCCGGAAG CGCTGCAAGC GTTCTCCACC TACGAGGGCA ACTGGGTTGC CGCGCCGGTT AACGTCCACT CCACCAACTG GGTCTGGGCC AACACCGCGC TGATGGAAGA GCTTGGTATC GAGCAGCCCG GCACTTGGGA AGAGTTCGTC GCCGCGATGG AAACGGCAGC AGAGGCGGGC TATACGCCGC TGGCCCACGG CGGTCAGGCT TGGCAGGACG CCACGATCTT CGACTCGATG GTGATGGGCG TTGGTGGACC CGAGTTCTAT CAGGCCTCCA TGGTCGATCT GGATCCTGAA GCCCTCGGCG GTGCGCAGAT GGTTGAAGCG TTTGACCGTA TGGCGACCCT GCGCGGCTTC GTGGATGACA ACTTCTCCGG TCGTGACTGG AACCTGGCCT CTGCCATGGT GATCAATGGC GAAGCGCTGT TCCAGATCAT GGGTGACTGG GCGAAGGGCG AATTCGTCAA TGCTGGCCTG ACGGCTGGCG ACGAATTCCA GTGCTTCCGC GTGCCCGGCA CCGAAGGCAC CGTGACCTTC AACTCCGACC AGTTCGCGAT GTTCGGCGTC GAGGACGAAG GCGATCAGGC GTCACAGGTT GCCATGGCCT CTGCCGTGAT GTCGCCTGAA TTCCAGATCG CGTTCAACGT GGTGAAGGGC TCTGCCCCTG CGCGCACCGA CATCGACGCA TCGTCCTTCG ACGCTTGTGG TCAGGCCGCC ATGGCGGATC TGGCGGCAGC CGGTGAAAGC GGTGGCCTGT TCGGCTCCAT GGCCCACGGC CACGCCAACC CGCCGTCGAT CCAGAACGCG ATGTACGACG TGATCACCGC CCACTTCAAC GGTGAGTTCG ACTCAGCAAC CGCCGCCGAA GAGATGGTCA CCGCCGTTGA GCTTGCTCAA TAA
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Protein sequence | MTMMKKLSTG AAVLALSTTA ITSVASAQDV EVLHWWTSGG EAAALNVLRE DLAGGGIGWT DMPVAGGGGS DAMTVLRARV TAGDPPTAVQ MLGFSIQDWA AEGALADLNA LAEEQNWNEV VPEALQAFST YEGNWVAAPV NVHSTNWVWA NTALMEELGI EQPGTWEEFV AAMETAAEAG YTPLAHGGQA WQDATIFDSM VMGVGGPEFY QASMVDLDPE ALGGAQMVEA FDRMATLRGF VDDNFSGRDW NLASAMVING EALFQIMGDW AKGEFVNAGL TAGDEFQCFR VPGTEGTVTF NSDQFAMFGV EDEGDQASQV AMASAVMSPE FQIAFNVVKG SAPARTDIDA SSFDACGQAA MADLAAAGES GGLFGSMAHG HANPPSIQNA MYDVITAHFN GEFDSATAAE EMVTAVELAQ
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