| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3923 |
|---|
| Symbol | |
|---|
| ID | 3936404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 4019955 |
|---|
| End bp | 4020773 |
|---|
| Gene Length | 819 bp |
|---|
| Protein Length | 272 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637906301 |
|---|
| Product | 5-carboxymethyl-2-hydroxymuconate delta-isomerase |
|---|
| Protein accession | YP_511865 |
|---|
| Protein GI | 89056414 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTG TCAGATGGGG GGAGGCGGGC GCGGAAAAGC CCGGCGTGCT AGATGCAGAT
GGCGGGGTGC GTGACCTGAG CGGTGTTGTT GCCGATATCG ATGGCACGTC CCTGGCGGCG
ATGCCCGAGA TCACGCCGGA AGACCTGCCC CTTGTGGGCA ACCCGCGCCT TGGTCCTTGC
GTCGGCAACG TCGGCAAGCT GGTCTGCGTG GGCCTCAACT ATGCGGACCA TGCCGCAGAA
GGCGGGTGGG ATGTCCCGAC CGAACCGGTG CTGTTCATGA AGGCTGTCAC CGCCATTTCC
GGCCCCAACG ACCCGGTGAT CCTGCCACCC GGCAGCGAGA AGACGGATTG GGAGGTGGAG
TTGGTCATCG TCATCGGCAC GCACGCGAAG AATACGACGG ACGGGGCCGC GCATATCGCG
GGCTATTGTC TTGGCAATGA CGTGTCGGAA CGGGCCTGGC AGCAAGAGCA CGGCGGCCAA
TGGACCAAGG GCAAGTCCCA CGACACCTTC GCGCCGCTTG GCCCCTGGCT GGTGACGGCC
GATGAATTGG GCGATCCCAC AGGACGCTCC ATCTGGCTGG ATGTGGACGG AGAGCGGATG
CAAGACGGCA ATACCGATAC GATGATCTTC AAGCCCGATT TCATCGTCGA ATACATCAGC
CGCTTCATGA CGCTGGAGCC CGGTGACATC ATCTTCACCG GCACGCCGCC CGGTGTGGGC
CTTGGCCGGC GACCCCAGGT CTTTCTGCGC GCGGGGCAAG AGATGCATCT GGGCATTGAC
GGCTTGGGAG AGCAGCGGCT GCCAGTCGTG GCGTCCTGA
|
|---|
| Protein sequence | MKFVRWGEAG AEKPGVLDAD GGVRDLSGVV ADIDGTSLAA MPEITPEDLP LVGNPRLGPC
VGNVGKLVCV GLNYADHAAE GGWDVPTEPV LFMKAVTAIS GPNDPVILPP GSEKTDWEVE
LVIVIGTHAK NTTDGAAHIA GYCLGNDVSE RAWQQEHGGQ WTKGKSHDTF APLGPWLVTA
DELGDPTGRS IWLDVDGERM QDGNTDTMIF KPDFIVEYIS RFMTLEPGDI IFTGTPPGVG
LGRRPQVFLR AGQEMHLGID GLGEQRLPVV AS
|
|---|
| |