| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3901 |
|---|
| Symbol | |
|---|
| ID | 3936382 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3999663 |
|---|
| End bp | 4000565 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637906279 |
|---|
| Product | phage SPO1 DNA polymerase-related protein |
|---|
| Protein accession | YP_511843 |
|---|
| Protein GI | 89056392 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1573] Uracil-DNA glycosylase |
|---|
| TIGRFAM ID | [TIGR00758] uracil-DNA glycosylase, family 4 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.463834 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGTC GACGGGCCAC TCGGCAACAA ATTGAGTGCA TCCGTGTTGA AGTGCCCTTT
CCGGCGTTGC CGATTGGGCC TACCTTTAAA GACATGTTGG ATGACCTGGG ATATTGGGAC
GCGCTGGCCG CCTTGGAGTG GCAGGTGGAG TTGGGCGCGG ATGAGGCGAT GCTGGATGCA
CCGCTGGATC GTTTCGATCT GCCGGCGCCC GTGGCGATGC CCAAAGCGCC CCCCGCGGCG
GGTCCTGTCG GCCCTTCAAG GGCGGCGGCT CCTGTCAATT CGACACGACC TGCCACGCTG
CCTCAGGTCG ATGCCGTTGC AATTGCGCGA CAATTGGCGG AGGCGGCGGG GTCGTTGGAA
GCGCTGAGCT CCGCGATGGA AGGGTTCGAG CATTGCGAGC TCAGGCGGGG CGCACGGAAT
TTCGTCTTCC ATGATGGGAC ACCGGACGCG CGCGTGATGA TCGTGGGGGA GGCCCCGGGC
CGGGAGGAAG ACAGTCAGGG CAAACCCTTC GTGGGCCGGG CCGGGCAGCT ACTGGACCGT
ATGTTTGCGG CGATCGGTCT GGATCGCGCC GTGGAGGGAG GCGAGGGTCT CTATATCACC
AATATGCTGC CCTGGCGTCC GCCGCAGAAC CGGGATCCGA AAGCTGAGGA GCTGGCGATG
ATGGCCCCGT TCGTGCAGCG TCACATCGAC CTGGTGGACC CGGAGGTCTT GGTGCTGATG
GGCAACCACG CCTGTGCGGG GTTGTTGGGG CGACGTGGGA TCACACGGAT GCGGGGCACA
TGGGAAGACG TGAACGGACG ACCCACGATG CCGATGTGCC ACCCCGCCTA TTTGCTGCGC
AATCCGGCGG CCAAGCGAGA GGCCTGGGCA GATCTTCTGT CGATCAAGGC GCGGTTGGCG
TGA
|
|---|
| Protein sequence | MAGRRATRQQ IECIRVEVPF PALPIGPTFK DMLDDLGYWD ALAALEWQVE LGADEAMLDA
PLDRFDLPAP VAMPKAPPAA GPVGPSRAAA PVNSTRPATL PQVDAVAIAR QLAEAAGSLE
ALSSAMEGFE HCELRRGARN FVFHDGTPDA RVMIVGEAPG REEDSQGKPF VGRAGQLLDR
MFAAIGLDRA VEGGEGLYIT NMLPWRPPQN RDPKAEELAM MAPFVQRHID LVDPEVLVLM
GNHACAGLLG RRGITRMRGT WEDVNGRPTM PMCHPAYLLR NPAAKREAWA DLLSIKARLA
|
|---|
| |