| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3827 |
|---|
| Symbol | |
|---|
| ID | 3936307 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3919210 |
|---|
| End bp | 3920610 |
|---|
| Gene Length | 1401 bp |
|---|
| Protein Length | 466 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637906205 |
|---|
| Product | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase |
|---|
| Protein accession | YP_511769 |
|---|
| Protein GI | 89056318 |
|---|
| COG category | [I] Lipid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0824] Predicted thioesterase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCG CAATCATCGG CGGGGGCGTC ATTGGCGGCG GATGGGCCGC GCGCTTCCTT
CTCAACGGCT GGAATGTGGC GATCTATGAC CCTGATCCGG AGGCCGAGCG CAAGATCGGC
GAGGTGATGG ACAACGCCCG ACGCGCCCTG CCCGGCCTTT ACGACACGGC CCTGCCGCCC
GAGGGCACGC TGCGGTTTAC CGATGACCTG GGCGACGCGG TTGGCGACGC CGATTGGGTG
CAGGAAAGCG TGCCGGAGCG GCTCGACATC AAGCACAAGG TCCACGCGGA GCTGACCACG
CTGGCCCCAG GCCGCGCCGT TATCGGCTCC TCCACGTCGG GATTCAAACC GTCGGAGCTC
ACGGAAAAAG GTGCGCGCGT GATCGTGGCG CATCCGTTCA ACCCGGTCTA CCTGCTGCCG
CTGATCGAAT TGGTCGGCGA CACGGACCAC TGCGCCAAAG CCGCCGAAAT CCTGCGCGGT
ATTGGCATGT ACCCGCTGCA TGTCCGCAAG GAGATCGACG CCCATATCGC GGACCGTTTT
CTGGAGGCCG TCTGGCGTGA GGCCCTTTGG CTGGTCAAGG ACGGCATCGC CACGACCGAA
GAAATCGACG AGGCAATTCG TATGGGCTTT GGCCTGCGGT GGGCGCAGAT GGGCCTGTTC
GAGACCTATC GTGTGGCCGG TGGCGAAGCG GGCATGAAGC ACTTCATGGC GCAGTTTGGG
CCTTGCCTGA CCTGGCCCTG GACCAAACTG ATGGATGTGC CGGAGTTCAC CGACGAGCTT
GTGGACCTGA TCGCCGGGCA ATCGGACGCG CAATCAGGCC ACCTCAGCAT CCGGGAGCTG
GAACGCCTGC GCGACGACAA TCTGGTGGGG ATCCTGCGCG GGCTCAAACA CTCGGGCGCG
GGCGCGGGCG GAGTGGTCGC ACGCCATGAG GCCGCACTAC CCAAGGCGGA TCAACCGATC
ACGCTCGACC GTCAGGTGCC CCAGGGCTGG ACCGACTACA ACGGCCACAT GAATGAGATG
CACTACCTGG AGGCCGGGTC CAAAGCGACG GATCGGTTCA TGGAAATGGT CGGCGCGGAC
GCGGCTTACA TCGCGCAGGG CCTCAGCTAT TTCACGGTGG AGAACCATGT CCGCTATCTG
GATGAGGTCC ACGCGGGCGA CAGGTTGCGG GCGGAGACGC GGTTGCTGGG GGGTGAAGGC
AAGAAACTGC ATGTATTCCA CACGCTCTAT CGAGGCGATG GCACCCTTGC TGCGACCGTT
GAAAGCCTGC TGTTACATGT CGATCTGGCG ACGCGTAGGA CGTGCCTGCC CGGTGAGGCC
GTGGCCTCAG CCCTTGCGCA GGTGGCCGCA GATCAAGCCG GGCTGCCAAT GCCCGACGGC
GCAGGCAAAG TCGGGCGCTA G
|
|---|
| Protein sequence | MKTAIIGGGV IGGGWAARFL LNGWNVAIYD PDPEAERKIG EVMDNARRAL PGLYDTALPP
EGTLRFTDDL GDAVGDADWV QESVPERLDI KHKVHAELTT LAPGRAVIGS STSGFKPSEL
TEKGARVIVA HPFNPVYLLP LIELVGDTDH CAKAAEILRG IGMYPLHVRK EIDAHIADRF
LEAVWREALW LVKDGIATTE EIDEAIRMGF GLRWAQMGLF ETYRVAGGEA GMKHFMAQFG
PCLTWPWTKL MDVPEFTDEL VDLIAGQSDA QSGHLSIREL ERLRDDNLVG ILRGLKHSGA
GAGGVVARHE AALPKADQPI TLDRQVPQGW TDYNGHMNEM HYLEAGSKAT DRFMEMVGAD
AAYIAQGLSY FTVENHVRYL DEVHAGDRLR AETRLLGGEG KKLHVFHTLY RGDGTLAATV
ESLLLHVDLA TRRTCLPGEA VASALAQVAA DQAGLPMPDG AGKVGR
|
|---|
| |