| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3818 |
|---|
| Symbol | |
|---|
| ID | 3936298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3908370 |
|---|
| End bp | 3909293 |
|---|
| Gene Length | 924 bp |
|---|
| Protein Length | 307 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637906196 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_511760 |
|---|
| Protein GI | 89056309 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.327974 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.201863 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGATTTC TCATGGGATT GGTGTGGTTG GTTGGCGTCA TCGTGGCGGC GATGGCTGCC
GGGTGGATCT TTCGCCAGAT CTTGGTTCTG ATCGCGCCAA AAGGCGTCGC CAAGGAACTC
CGCACGGCGC CGATGACGGC GAGCTTCGGG ATGCTGATGA TCCTGATCTA CATTCTGGTG
GCCGTCTTCG CGCCCCTGAT CGCGCCGTTC GGAGAGACAG TAGTCGTGGG TCGCGAATAT
GAGGCCTGGA GCGACGAATT CCTTCTGGGC ACCGACAATC TGGGCCGCGA CATGCTTTCG
CGCCTCATCT ACGCGGCGCG CAACACAGTG GGCATCGCCT TCGTGACAAC GGCCTTGGCG
TTCATCATCG GGTCTGTTCT GGGCCTTCTG GCGGCCATCG TCGGCGGGTG GCTGGATCAG
ATCCTGTCGC GCGCCGTGGA CGTGCTGATG GCCATTCCGG CCCTGATCTT CGCTCTGCTG
CTGCTGACCA TCGTCGGCAC GTCGATCGTC AACATGATCA TCGTTATCGC CCTGATCGAC
AGCACGCGGG TCTACCGTTT GGCGCGGTCG GTGGCGATGA ATATCGTTGT CATGGATTAC
GTGGAGGCGG CGAAACTGCG TGGTGAGGGG CTTTGGCGGC TCATCACCCG CGAAATCCTG
CCAAACGCCA TGGCCCCGCT CGTGGCCGAG TTCGGCCTCC GGTTCTGCTT CGTGTTCCTG
ATGATCTCGG CCCTGTCGTT CCTGGGCCTC GGGATGCAAC CGCCGACTGC GGACTGGGGC
TCCATGGTGA AGGATAACGC GACTCTGATC ACCTTCGGAG ACATCACGCC GCTGCTGCCT
GCGGGCGCCA TCGCGCTGCT GACGGTGAGC GTGAACTTCG TCGTCGACTG GCAGCTTCAC
CGCGCCTCTG GTTTGAAGGA ATAA
|
|---|
| Protein sequence | MGFLMGLVWL VGVIVAAMAA GWIFRQILVL IAPKGVAKEL RTAPMTASFG MLMILIYILV
AVFAPLIAPF GETVVVGREY EAWSDEFLLG TDNLGRDMLS RLIYAARNTV GIAFVTTALA
FIIGSVLGLL AAIVGGWLDQ ILSRAVDVLM AIPALIFALL LLTIVGTSIV NMIIVIALID
STRVYRLARS VAMNIVVMDY VEAAKLRGEG LWRLITREIL PNAMAPLVAE FGLRFCFVFL
MISALSFLGL GMQPPTADWG SMVKDNATLI TFGDITPLLP AGAIALLTVS VNFVVDWQLH
RASGLKE
|
|---|
| |