| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3817 |
|---|
| Symbol | |
|---|
| ID | 3936297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3907401 |
|---|
| End bp | 3908357 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637906195 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_511759 |
|---|
| Protein GI | 89056308 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.950676 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.209619 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACATA TCTGGATAAT GATCGCGCAG CGGCTGGCTC TTGGCCTTGT CACTCTGTTC
GTGGTGTCAT TGATCATCTT CCTCGGCACC GAGCTTCTGC CCGGTGACTT CGCGCAGGAG
ATCCTTGGCC AATCCGCTAC GCCTGAAACC GTCGCCGCCC TGCGCGAGCA ATTGGGCCTG
AACGACTCGA TGGTGACGCG ATATGCCAAC TGGCTGGGGG ATGTGCTGCA AGGGGATCTG
GGGGAGAGTC TCGCCAACGG ACAATCGGTG TCCGAACTGA TCGGACGCCG CCTTGGCTGG
ACCCTGTCAC TGGCGCTTTA TGCGGCCGCC ATCGCGGTGC CCTTGTCCCT GACCCTCGGC
ATCCTCGCAG CCCTCTTCCG CAACTCCTTC TTCGACCGCT TCGCCAATGC CTCGGCGCTC
ACGTCGATCT CCTTCCCCGA ATTCTTCGTC GCCTACATCC TTATCTTCTA TCTGGCGGGC
GCAGGCGGGC CGTTCCCGTC GATCTCCAAT ATGCGCGGCG TGGAGGGGTT TGGCGATTAC
CTCTACCGCA CCTTCCTGCC CGCTTTGACG CTGACCTTGG TCGTCACCGC CCATATGATG
CGGATGACGC GGGCCGCGAT CATCAACCTT CTGGCGTCGC CGTACATTGA AATGGCGCGG
CTGAAGGGCA TGTCGCCCAT GCGCGTTGTG GTGAAACACG CGCTGCCCAA TGCGCTGGCC
CCGATCATCA ACGTGGTGGC CCTGAACCTT GCGTATCTGA TCACCGGCGT CGTCGTGGTG
GAGGTCGTCT TCGTCTACCC CGGCCTTGGC CAGTTGATGG TTGATTCAGT GTCGGCCCGT
GACATGCCGG TCGTCCAAGG CATCGCCCTT GTCTTCGCCG CCGCCTACGT GCTGCTGAAC
CTCACCGCGG ATGTGTTGGC GACCTTGTCC AACCCCCGCC TCGTGCACCG TCGCTGA
|
|---|
| Protein sequence | MSHIWIMIAQ RLALGLVTLF VVSLIIFLGT ELLPGDFAQE ILGQSATPET VAALREQLGL
NDSMVTRYAN WLGDVLQGDL GESLANGQSV SELIGRRLGW TLSLALYAAA IAVPLSLTLG
ILAALFRNSF FDRFANASAL TSISFPEFFV AYILIFYLAG AGGPFPSISN MRGVEGFGDY
LYRTFLPALT LTLVVTAHMM RMTRAAIINL LASPYIEMAR LKGMSPMRVV VKHALPNALA
PIINVVALNL AYLITGVVVV EVVFVYPGLG QLMVDSVSAR DMPVVQGIAL VFAAAYVLLN
LTADVLATLS NPRLVHRR
|
|---|
| |