| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3813 |
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| Symbol | |
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| ID | 3936293 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3901351 |
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| End bp | 3902052 |
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| Gene Length | 702 bp |
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| Protein Length | 233 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637906191 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_511755 |
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| Protein GI | 89056304 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.388274 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0207889 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTAAAG TTGCACTGAT AACTGCGGGC GGAAGCGGAA TGGGCGCGGA CAGCGCAAGC
GCGCTCGCGG CCGATGGCTA CAAGGTCGGC ATCCTGTCGT CCTCCGGCAA GGGAGAGGCG
TTGGCCCATG AATTAGGCGG CGTCGGCGTG ACCGGTACAA ACAAATCCGA GGACGATCTG
CAAGCGCTCA TTGATGCGGC GATGACCCAT TGGGGCCGCG TCGACGTGTT GGTGAATTCA
GCCGGACACG GCCCGCGCGC GCCCGTGCTG GAGTTGACCG ATGCCGACTG GCACGAGGGG
ATGGAGGTCT ATTTCCTCAA CGCCGTGCGC CCATCGCGCC TTGTCACCCC GATCATGCAG
GCCCAGGGTG GCGGCGCGAT CATCAACATC TCCACCTTCG CGGCGTTCGA GCCCAATGCC
GTGTTCCCGA CCTCCGGCGT GATGCGCGCG GGCCTTGCCG CGTTCACCAA GCTCTTCGCC
GACACATACG CGCCCGAGAA TATCCGCATG AACAACGTGC TGCCCGGCTT CATCGACAGC
CTGCCGGAGA AAGAGGAGTT CCGCGCGATG ATCCCCATGG GCCGCTACGG GAACTCCCTA
GGTGAGATCG CCAGCGTTGT GGCCTTCCTC GCCTCCGCCG GCGGGGCGTA TATCACCGGA
CAAAACATTC GTGTGGATGG CGGGATCACG CGGTCGGTTT GA
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| Protein sequence | MTKVALITAG GSGMGADSAS ALAADGYKVG ILSSSGKGEA LAHELGGVGV TGTNKSEDDL
QALIDAAMTH WGRVDVLVNS AGHGPRAPVL ELTDADWHEG MEVYFLNAVR PSRLVTPIMQ
AQGGGAIINI STFAAFEPNA VFPTSGVMRA GLAAFTKLFA DTYAPENIRM NNVLPGFIDS
LPEKEEFRAM IPMGRYGNSL GEIASVVAFL ASAGGAYITG QNIRVDGGIT RSV
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