| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3796 |
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| Symbol | |
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| ID | 3936276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3882406 |
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| End bp | 3884331 |
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| Gene Length | 1926 bp |
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| Protein Length | 641 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637906174 |
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| Product | TRAP transporter, 4TM/12TM fusion protein |
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| Protein accession | YP_511738 |
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| Protein GI | 89056287 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4666] TRAP-type uncharacterized transport system, fused permease components |
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| TIGRFAM ID | [TIGR02123] TRAP transporter, 4TM/12TM fusion protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 5 |
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| Fosmid unclonability p-value | 0.000778061 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGATATCGA GCGGGGGAGG CTTTGGCATG CCCCCCCACC TCTGGCGACC CGTGGCGCAG
GGGTTGGCTG CGCTACTCAC GCTGTTGGCG ATGGCCTGGG CGCTTTCGCT GCAACGCGCC
GTCGGTCTGA ACCTTTATCC GCAACAGTTC TTCGCTGCGA TCCTTGCGCT GGCCCTGCCG
CTGGCGTTCC TGTCGCTGCC TGCGCGGCGC GGCGTGGAAC GGGAGGCGGT GCCTTATCTT
GACGTCGCTC TCGCTATCGC CGCGTTTGTC GCTATTGGCT ATGTCGCCTG GCACTACTCG
CGCCTTGTCC TGCTGATCTT CTCGCGCCCG GCGGAGATTT GGGGGCCCGG CCTCGTCATC
CTGATCCTGA CGCTTGAGGC GCTGCGCCGG GCGACCGGTT GGGCGCTGGT GGTGATTATC
CTCGTCTTCC TGCTCTACGC GCTGTTCGGC GACGCGCTGC CGGGACGCCT GCAGGGACGC
GCCCAAAGCT GGCAGTTGCT GGCGGGTTAC ATGGCGCTTG ATGCCAATGG CATGCTTGGC
CTGCCGATCT CTGTCGCGGC GACAGTCGTG GTGGCCTTCA TCTTCTTCGG CACGCTTCTG
GCGATCACCG GCGGATCCAC CTTCTTTACC GATGCCGCGA TGCTTGGGAT GGGCCGGTTC
CGGGGCGGGT CGATGAAGAT CGCCGTGCTG GCCTCGGGTC TATTCGGCTC CATCTCGGGC
TCCGCGGTGG CCAACGTCGT CGGCACAGGT GTGGTGACGA TCCCGATGAT CAAACGAGAT
GGCTATCCCG GCCACAAGGC CGCAGCGATC GAGGCGGTGG CCTCGACCGG TGGGCAACTG
ATGCCGCCGG TCATGGGGGC GGCGGCCTTC CTGATGGCGG AGTTTCTGGC CGTCCCCTAT
TCCGAAATTG TGCTGGCGGC GCTGGTCCCG GCGCTGCTCT ACTACGTGGC CCTGTTCATC
CAGGCCGACA TGGAGGCCGC GAAGCTGGGC ATCCGCGCCG TACCCGCCGA TCAGATCCCT
GATCGCAAGA CGGTGTTGCG CGGTCTGCAT TTCCTGCTGG CATTCGCAGT CCTGATCTAC
CTGCTGTTCT GGCAACGCTA CCAACCTGAA CGCGCCGCAC TTTGGGCGGC GGGCGTGCTG
GTCCTGACAT CTCTGGCTAT TGGCTACCGA GGCGCGCGGC CAGCCCTCAC AGCGCTCGTC
GGAGCCCTTT CCCGATGTGG CCTTGCGGTG GTGGAGATCA TCCTGATCTC GGCGGCAGCG
GGCATCGTGA TCGGGGTTCT GAACGTCACC GGCCTGTCCT TCAACCTGAC CTATGCGCTG
GTCCAGATCG GCGGCGGCAG CGCGCCTTTG CTGCTGTTCC TCTCGGCGCT GGTGTGCATC
GTGCTTGGCA TGGGCCTGCC GACGCTCGGG GTCTACGTGC TTTTGGCCGC CCTTGTCGCG
CCTGCGTTGA TCGAGGTCGG CATCTCACCC ATTGGCGCGC ATCTCTACGT GCTCTACTTC
GGGATGATGT CGATGATCAC ACCCCCCATC GCATTGGCCG CTTTTGCCGC CGCCTCAATC
GCCAAAGCGC CCGCCATGGC AACGGGATGG GCCGCGATGC GGTTTGGCTG GTCGGCCTAT
GTGATCCCGG TCCTGTTCGT GGCCTCCCCC ACCTTGCTGA TGATCGGAGA GGTCGGAGAT
ATCGCGCTGG CCATTGTGAC CGCGACACTC GGTGTCTGGC TCGTGTCCTG TGCCTTGGCC
GGATATTTCT CCGGCCCGCT CAAGCCGATG ATGCGCGTGG GTTTTGCGAT GGCGGGGCTG
GCCGCATTGA TACCGGCGGC CGCGTTCGAC GGTGCGCTGT TGACCGACAT CGGCGGGATC
GCTTTGGGCG TGGCATTCAT GGCGGTGGAT ATCCTGCGCA ACCGCCAAGC GGAGGTCCGG
GTATGA
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| Protein sequence | MISSGGGFGM PPHLWRPVAQ GLAALLTLLA MAWALSLQRA VGLNLYPQQF FAAILALALP
LAFLSLPARR GVEREAVPYL DVALAIAAFV AIGYVAWHYS RLVLLIFSRP AEIWGPGLVI
LILTLEALRR ATGWALVVII LVFLLYALFG DALPGRLQGR AQSWQLLAGY MALDANGMLG
LPISVAATVV VAFIFFGTLL AITGGSTFFT DAAMLGMGRF RGGSMKIAVL ASGLFGSISG
SAVANVVGTG VVTIPMIKRD GYPGHKAAAI EAVASTGGQL MPPVMGAAAF LMAEFLAVPY
SEIVLAALVP ALLYYVALFI QADMEAAKLG IRAVPADQIP DRKTVLRGLH FLLAFAVLIY
LLFWQRYQPE RAALWAAGVL VLTSLAIGYR GARPALTALV GALSRCGLAV VEIILISAAA
GIVIGVLNVT GLSFNLTYAL VQIGGGSAPL LLFLSALVCI VLGMGLPTLG VYVLLAALVA
PALIEVGISP IGAHLYVLYF GMMSMITPPI ALAAFAAASI AKAPAMATGW AAMRFGWSAY
VIPVLFVASP TLLMIGEVGD IALAIVTATL GVWLVSCALA GYFSGPLKPM MRVGFAMAGL
AALIPAAAFD GALLTDIGGI ALGVAFMAVD ILRNRQAEVR V
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