| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3791 |
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| Symbol | |
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| ID | 3936271 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3875636 |
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| End bp | 3877417 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637906169 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_511733 |
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| Protein GI | 89056282 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0543845 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGTCG GGCGGGCTTG CGGCTGTGGG CGCGCTCAGC ATTATCGGAT TGATGGGGAT
TACCCTGGTG GCGGTGGTCT GGCGCTACTG GTTCCGGGCG CCGATCTCGG GCACCGGGGA
TATCTCGCAG ATGATGCTGA TTATCGTGGC AGGTGCCGCT GTGGCCTACG GCGCACGGCA
TCAGGCCCAT GTCAGCGTCG ATCTGATCGC GCCTCTTGGG CGGCGTGTCA CGCGCATCAC
CGATATCGTG ATGCGGGGGC TGACGTTGTT CATCATCGGG CTGTCCGTTT ACGCCTTGAT
GGACAAGGCC TGCGGGATGG AGCGGGCCTG CATCACCTCG ACCCTGTCGA TCGAGCATCG
TCCGTTCTAC TGGTATCTGG CCGTCGCCAT GGCCGTCTAC GCCGCACAGG TGGCCGTGCA
TTTGGGCATT GGCATCGCCA CCTTCCGGGG CACAGATCCA ACCGAGGTCA ATTCCTGATG
GATCCATCGA CAATCGGCTT TGTCGGCTTC GGCCTTCTGT TCGTCCTGCT GCTTATCCGC
ATGCCTGTGG GCGCGGCGAT GATGCTGGTG GGCACCGCTG GCATCTGGAT GATCCGCGAA
CGCGCGGCGA TCCCCAAGCT GGCGGGCGAG ATTTTCAACG AGGCGTCGAA CTATCCGCTG
ACGATCATCC CGCTGTTTGT TCTGATGGGC AATCTTGCCG GTGTATCGGG GATGAGCCGG
GATCTGTATA CCGCCGCCCA TGCCTGGCTT GGTCATATGA AGGGTGGGCT GGCATCTGCC
ACAATCGTTG GCTGCGCGGG GTTTTCGGCG CTGTCAGGCT CCTCGCTGGC GGCTGCGCTG
ACGATGGGGC GCGTCGCCCT GCCCGAAATG CAGCGCTACA AGTATGACAA TGGCCTGGCG
ACCGGCGCCA TCGCGGCGGG GGGCACCTTG GGCATCCTCA TCCCCCCATC GGCGGGCTTC
GTCGTCTATG CCATTCTGAC CGAAGAAAGC ATCGGGCGGC TGTTCATGGC CGGCGTCCTG
CCGGGGCTGA TGCTGACGTC GCTGTTCATC TTCGCGATCT GGCTGTCGGT CCTGCGCAAA
CCCGAGCGCG CGCCCGCCGC AGCAGAACGT ATGCCCATCG GTCAGCGGTT CAGCGCACTA
TTCCGGTCCT TCTGGATCAT CGGCATTATC GTGGCGACTA TCGGCGGCAT CTACACCGGC
GTCTTTTCAG CGGTGGAGGC CGCAGGCGTC GGCGCATTCC TCGCCCTTCT GGTGACGCTG
ATCCGGGGCA CGATGACCTG GGCCAACATG GTCGATGTGT TTACCAGCAC GCTGAAATCC
ACAGGTACCG TCTTTCTGAT CCTGTTCGGC GCCTTCGTGT TCAAATCCTT CGTGGGTTTT
ACCGGCATCA CCATCACCCT GTCGGAATGG GTCGCGGTGC AGGGGTTCAC GGGGTTTCAG
ATTGTCGTGG CCTTCCTGTT GCTGTTCATC GTGCTTGGCA TGTTCATGGA AGGCTTCGCG
ATCCTCGTGC TAACGGTGCC GCTGATCCAG CCAATCATCC AGCCGCTTGG CATCGACATG
ATCTGGTTTG GTGTCCTGAT GGTTATCGTG CTGGAAATGG GGCTGATCTC CCCGCCCGTG
GGCGTCAACG TCTTCGTGGT GAAGGGCATT GCGCGCGACG TGCCGCTCAA CACCATCTTC
CGGGGCATCT GGCCGTTCTG GTTCGCCATG TTGGCCGCCG TCCTGCTGAT CCTCACCTTC
CCGCAAATCG CATTGCTCCT GCCCAACACG ATGTTCGGCT AG
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| Protein sequence | MAVGRACGCG RAQHYRIDGD YPGGGGLALL VPGADLGHRG YLADDADYRG RCRCGLRRTA
SGPCQRRSDR ASWAACHAHH RYRDAGADVV HHRAVRLRLD GQGLRDGAGL HHLDPVDRAS
SVLLVSGRRH GRLRRTGGRA FGHWHRHLPG HRSNRGQFLM DPSTIGFVGF GLLFVLLLIR
MPVGAAMMLV GTAGIWMIRE RAAIPKLAGE IFNEASNYPL TIIPLFVLMG NLAGVSGMSR
DLYTAAHAWL GHMKGGLASA TIVGCAGFSA LSGSSLAAAL TMGRVALPEM QRYKYDNGLA
TGAIAAGGTL GILIPPSAGF VVYAILTEES IGRLFMAGVL PGLMLTSLFI FAIWLSVLRK
PERAPAAAER MPIGQRFSAL FRSFWIIGII VATIGGIYTG VFSAVEAAGV GAFLALLVTL
IRGTMTWANM VDVFTSTLKS TGTVFLILFG AFVFKSFVGF TGITITLSEW VAVQGFTGFQ
IVVAFLLLFI VLGMFMEGFA ILVLTVPLIQ PIIQPLGIDM IWFGVLMVIV LEMGLISPPV
GVNVFVVKGI ARDVPLNTIF RGIWPFWFAM LAAVLLILTF PQIALLLPNT MFG
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