| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3783 |
|---|
| Symbol | |
|---|
| ID | 3936263 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3867175 |
|---|
| End bp | 3868134 |
|---|
| Gene Length | 960 bp |
|---|
| Protein Length | 319 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637906161 |
|---|
| Product | hydroxymethylglutaryl-CoA lyase |
|---|
| Protein accession | YP_511725 |
|---|
| Protein GI | 89056274 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCCGCG CCGCCATTCC CATGCCAGAG GGCAGCCATG TGACAGTGTG CGAGGTCGGC
CCACGCGACG GGTTCCAAAG CGAAAAGACT TTCATCCCGA CTGCCCGCAA GATCGAGATT
GCGAATGCCA TGTTCGCCGC CGGTTTGCGC CATATCCAGG TGACGTCCTT CGTCAGCCCC
CGCGCCGTGC CGCAACTGGC GGATGCGGCA AAGCTGATCG CTGGGCTGGA CCGGCCCGAT
GGTGCGGTCG TCTCGGCCTT GATCCCCAAC CTGAAAGGGG CGGAACGCGC GGCGGCGGCC
GGGGTGGATG CGGTCCACAC CGTCGTCTCG GCGTCCGAGA CCCATAACCT TAAGAATGTG
AACCGCCCCA TCGACCAGTC ACTGGCTGAT TTTGAGGACG TCGCAAAACT GATGCATCGC
GAGGGCATCG TGGTGGAGGG CGGCATGGCG ACAGCGTTCG GCTGCCCCTT TGAGGGCGTC
GTTCCGCCCG AACAGGTCGC CCGCATCGCC AGACGGTATC AGGACTTGGG CGCCAAGCGG
GTCAGCCTGG GTGACACGAC GGGTATGGCG ACCCCAACAA CTGTCCGCGC CGCCGTTCGG
GCCATCCGCG CCGAGGCGCC GGGGGTGGAA ATCTGCCTCC ACTTCCACAA TACGCGCGGT
GTCGGCCTCG CCTGCGTCAT GGCGGGTCTG GCCGAGGGAG TCAGCTACTT CGATGCGGCG
ATCGGCGGGC TTGGCGGGTG CCCGTTTGCG GCGGGGGCCA CGGGCAATAT CTGCACCGAG
GATTTGGTCT ATCTTCTTGA AGAAAGTGGA TACCGCACCG GAGTGGATCT TGAGGCGTTG
ATTTCCGTCG CCGGTCTGGC GCAGGAGACC ATCGGACGCG ACCTGCCGGG GCAGGTCATG
AAGGCGGGGC CGCGCCTGCG CCGCTATGAT CCCGCGCTGA CCGTCACGGC GCAGGGATGA
|
|---|
| Protein sequence | MSRAAIPMPE GSHVTVCEVG PRDGFQSEKT FIPTARKIEI ANAMFAAGLR HIQVTSFVSP
RAVPQLADAA KLIAGLDRPD GAVVSALIPN LKGAERAAAA GVDAVHTVVS ASETHNLKNV
NRPIDQSLAD FEDVAKLMHR EGIVVEGGMA TAFGCPFEGV VPPEQVARIA RRYQDLGAKR
VSLGDTTGMA TPTTVRAAVR AIRAEAPGVE ICLHFHNTRG VGLACVMAGL AEGVSYFDAA
IGGLGGCPFA AGATGNICTE DLVYLLEESG YRTGVDLEAL ISVAGLAQET IGRDLPGQVM
KAGPRLRRYD PALTVTAQG
|
|---|
| |