Gene Jann_3712 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3712 
Symbol 
ID3936192 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3796575 
End bp3797585 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content59% 
IMG OID637906090 
Producttranscriptional regulator 
Protein accessionYP_511654 
Protein GI89056203 
COG category[K] Transcription 
COG ID[COG4977] Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.990015 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCATCA AAACAACCGT GATCGGATCA CCACTCGCCG GAACGTCTGT TCTGTTTTGC 
ATCCTCGACG TCCTCGCGTC CGTAGGGCGA GACTGGGAGA TGTTGCATGG GCTGCCTGCT
CAGGTGCCGG TCTTCCAAGT CAGCCTCAGA ACCGCTGACG GCGCGCCCTA TTGGGATGTG
AACGGACGCA AAATTACGCC CGACGCAAGG CTCGATGAAG ACCCTGCACC GGACCTCATC
ATCGTGCCGG ACATGCACTT TGATCCCAAC GCCGGGTTTC CCGAGGACTA TCGAAAGATG
GCGAACTGGC TCGTCGCGGC GTATGAGCGC GGCGCCATCG TGACGTCCGT CTGTTCCGGG
GCGGTTCTGC TGGGTGCGGC TGGGTTGCTC GACGGCAAGG AGGCCACCAC ACATTGGGGC
TATGCGGAAA TGCTAGGCCG CAATTTCCCC GACGTGAAGG TTTGTCGAGA ACGCATCTTG
GTGCCCGCCG GTGAGGGCCA TAGGGTCGTG ACCGCAGGCG GCGTCTCGGC TTGGGCCGAT
TTGATGCTCT ATCTCATTGC TCGGTATGCA GGCACAGACG AAGCCCGGCG CATTGCCAAG
ATCTACCTGA TCGACCCGCA CAGCGAAGGG CAGTTGACCT ATGCCTCGCT TACGTCGGGT
CGCCAACACG ACGACCAATT GATTGCAAAG GCCCAAGTTT GGGCTGCACA GAACTACGAT
GCATCAAGTC CGGTTGCTGC CATGGCCGAA CAGGCCCACA TGACTGAGCG TGGTTTTCTG
CGTCGGTTCA AGAAGGCAAC GGGACAGGCC CCGACGGATT ACATTCAGAC TCTCCGGATC
GAAGAAGCAA AGCAACTGCT GGAAACGACC GCCATGCCAA TCGAGGATAT ATCGACCGAG
GTCGGTTATT CCGAGCCGTC AAGTTTCCGC GCCGCATTTC GAAAGCGCGT TGGGATATCG
GCATCTGCCT ATCGCAAGAA ATGGCACGCC TTGGCGCCGA CAGGGTTATG A
 
Protein sequence
MSIKTTVIGS PLAGTSVLFC ILDVLASVGR DWEMLHGLPA QVPVFQVSLR TADGAPYWDV 
NGRKITPDAR LDEDPAPDLI IVPDMHFDPN AGFPEDYRKM ANWLVAAYER GAIVTSVCSG
AVLLGAAGLL DGKEATTHWG YAEMLGRNFP DVKVCRERIL VPAGEGHRVV TAGGVSAWAD
LMLYLIARYA GTDEARRIAK IYLIDPHSEG QLTYASLTSG RQHDDQLIAK AQVWAAQNYD
ASSPVAAMAE QAHMTERGFL RRFKKATGQA PTDYIQTLRI EEAKQLLETT AMPIEDISTE
VGYSEPSSFR AAFRKRVGIS ASAYRKKWHA LAPTGL