| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3677 |
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| Symbol | |
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| ID | 3936156 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3753884 |
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| End bp | 3755263 |
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| Gene Length | 1380 bp |
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| Protein Length | 459 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637906054 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_511619 |
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| Protein GI | 89056168 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACG GGACACTCAT TACCCTGATC TCTCTGGGCG TGACCTTCCT GTTCATGTTG
GGGGTCCCGG TGTTTCTGGT GATCGGCTAC TGGGTTATCG GCATGTCGTT CGTGTTGGGC
CTTCCGCTCG ACAATATCGC GGCTGCCCTG TCCCGCGTCT TCACCGACGG CTTCGCGCTT
CTGGCCATGC CGCTGTTCAT CCTGACTGGC GACCTGATCA ACCGATCCGG CATCGCGAGG
CGTCTGACCG ACTACGCCTA TGCCTGCCTG GGCTGGATAC GGGGCGGCCT CGCCATGGCA
GCGCTTGGGG CTTGCGGTCT CTTTGCGGCC ATCTCGGGCT CCAACTCCGC CACCACGGCC
ACCATCGGCT CTATGCTGCA CCCGGAAATG GTGAAGGGCG GGTATGATGA ACGCTTCTCG
GCCGCGACGG CGGCGGCGGG CGGTACGGTC GGGATCATCA TCCCGCCGTC GATCATCTTC
ATCGTCTATG GCTTCCTGAT GAACCTGCCG ATCTCAGACC TCTTCGTGGC GGGCATCATT
CCCGGCTCGC TCATGGTTCT GGCGATGATG ACGGCCTGTT TCCTGGTCTG TTTCAAAAAC
AAGTGGGGCT ACATCATCGA CCTCAACATC CTGCGGGTCT TGAAGACCGG TATCGGCGCA
TGGCTGGGCT TCTTTGCAAT CGGCCTCGTG CTTTGGGGCA TCTACACCGG CAAATTCTCT
CCCACGGAAG CGGCGGGCGT GACGGTGGGC TTCTGCGTTT TCGTGGGCTT TGCGTGCCTC
GCGATCACGA AGCTCATCAG CATCTCCAAC CCGAGCTTTG CCACCCGTGA AGAGCGCCCG
GTGGACGAGC GCAGCTTCGG CGGCATGCTG GTCGTCAACG GTTTCGGCCC GCTGGAATTG
CCGTCGATTA CCATGCGCTC GGCCCAGATC ACCGGCATCC TGGCGCCGCT GATCGCGGTG
TCCGTGGTGA TGCAGCAGAT CCTGTCGGTT CTGGGGGCGC AGGCGTTCCT GACCGATTTC
GTGACCTCCA TGGGTGGCTA CTACGCTGTC CTCTTCACCG CAATGGCGAT CGTCTTCGTG
TGCGGCATGG TGCTGGAGTC GCTTCCGGTG ACGATCATCC TTGCGCCCAT TCTGGCGCCC
ATCGCCCATG ACATCGGGGT GGAACCCGTG CAGTTTGCGG TGATCTTCCT TGTGGGCGCG
TCCATCGGCT TCATCACGCC GCCTTACGGT TTGAACCTCT ACGTGGCCTC CGGTGTGACA
GGGGTGCCGT ACTTCAAATT GTTGCGGTAT ACTTGGCCCT ACCTGATCGC GTTGATCTCG
ATCTGGATCA TCGTGGCGCT TGTGCCGTCG CTGTCGACGA TGCTACTGCC CGACCTCTAA
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| Protein sequence | MTDGTLITLI SLGVTFLFML GVPVFLVIGY WVIGMSFVLG LPLDNIAAAL SRVFTDGFAL
LAMPLFILTG DLINRSGIAR RLTDYAYACL GWIRGGLAMA ALGACGLFAA ISGSNSATTA
TIGSMLHPEM VKGGYDERFS AATAAAGGTV GIIIPPSIIF IVYGFLMNLP ISDLFVAGII
PGSLMVLAMM TACFLVCFKN KWGYIIDLNI LRVLKTGIGA WLGFFAIGLV LWGIYTGKFS
PTEAAGVTVG FCVFVGFACL AITKLISISN PSFATREERP VDERSFGGML VVNGFGPLEL
PSITMRSAQI TGILAPLIAV SVVMQQILSV LGAQAFLTDF VTSMGGYYAV LFTAMAIVFV
CGMVLESLPV TIILAPILAP IAHDIGVEPV QFAVIFLVGA SIGFITPPYG LNLYVASGVT
GVPYFKLLRY TWPYLIALIS IWIIVALVPS LSTMLLPDL
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