| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3643 |
|---|
| Symbol | |
|---|
| ID | 3936121 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3716366 |
|---|
| End bp | 3717925 |
|---|
| Gene Length | 1560 bp |
|---|
| Protein Length | 519 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637906019 |
|---|
| Product | 2-isopropylmalate synthase |
|---|
| Protein accession | YP_511585 |
|---|
| Protein GI | 89056134 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0119] Isopropylmalate/homocitrate/citramalate synthases |
|---|
| TIGRFAM ID | [TIGR00973] 2-isopropylmalate synthase, bacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.168419 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTCTG AAAACAGAGT CCTGATTTTT GACACCACCC TGCGCGATGG CGAGCAATCG
CCGGGCGCAA CCATGAGCCA TGATGAGAAG TTGGAGATTG CCACGCTTCT GGATGAGATG
GGCGTCGACA TCATCGAGGC GGGCTTCCCG ATTGCCAGCG AGGGCGATTT CAACGCCGTG
TCCGAGATCG CGAAAAACGC CACAAAGTCC ACGATCTGCG GGCTGGCGCG CGCCAACTTC
AAGGACATCG ACCGAGCGTG GGAGGCGGTG AAACACGCCA AATCGCCGCG CATCCACACG
TTTATCGGGA CCTCTCCGCA ACACCGCGCG ATCCCGAACC TGACCATGGA CGAGATGGCC
GACCGCATTC ACGAAACGGT CACTCACGCC CGCAACCTCT GTGACAATGT GCAATGGTCG
CCGATGGACG CCACGAGGAC GGGGTGGGAC TATCTGGCCC GCACCGTGGA GATCGCGATC
AAGGCGGGCG CCACGACAAT CAACATCCCC GATACCTGCG GCTATACGGC GCCGGTGGAA
AGCGCAGATC TGATCCGTCG TCTGATCGCG GAGGTGCCGG GCGCGGACGA GATTATCTTC
GCCACGCATT GCCACAACGA TCTGGGCATG GCGACTGCGA ACTCCCTGGC GGCGGTCGAC
GGCGGCGCGC GGCAAATTGA GTGTACCATA AACGGTCTGG GGGAACGCGC GGGCAACACC
GCCTTGGAAG AGGTCGTGAT GGCCATGAAG GTCCGCCACG ACATCATGCC CTACACCTCC
GGGATCGACA CCACCAAGAT CATGCACCTG TCTCGCCGGG TGGCGACGGT GTCCGGCTTC
AACGTGCAGC CCAACAAGGC CATCGTCGGC AAGAACGCCT TTGCCCATGA GTCTGGCATC
CATCAGGACG GGATGCTGAA ATCCGCCGAT ACGTTTGAAA TCATGCGCCC GGAGGACGTC
GGGCTGAGTG AGACGAATAT TGTCATGGGC AAGCACTCCG GTCGCGCGGC GTTGCGGTCC
AAGTTGAAAG ACCTGGGCTA TGACATGGCC GACAACCAGC TGAACGACCT GTTCGTGCGG
TTCAAGGCGT TGGCGGACCG GAAGAAAGAG GTCTTCGACG ATGACCTGAT CGCGCTGGTC
ACCGATGCCG GGAGCGATGG TGAAGGTCAT CTGGAGGTGA AATTCCTGCG TGTGATATGC
GGGACGGAGG CGCCGCAAAG CGCCGACCTG ACCCTGCGCG TGGGCGACAC CGATCACCAG
GCCACGGCCC AGGGCGACGG CCCCGTGGAC GCGGCCTTCA ATGCGGTCAA AGCGGTCTTC
CCCAATGAGG CGGCGTTACA ACTCTATCAG GTGAGCGCCG TGACCGAGGG CATGGACGCC
CAGGCCACCG TGACCGTGCG GGTCGAAGAA GGCGGGCGCA TCGCCACGGG CCAGTCGGCG
GATACCGATA CGGTCGTGGC CAGCGTGAAA GCGTATGTGA ACGCCCTCAA CCGCCTGATC
GTACGGCGAG AGAAGACGGG CGGCGACGTG CGAGAGGTCA GCTACAAGGA CGTAGGGTAG
|
|---|
| Protein sequence | MTSENRVLIF DTTLRDGEQS PGATMSHDEK LEIATLLDEM GVDIIEAGFP IASEGDFNAV
SEIAKNATKS TICGLARANF KDIDRAWEAV KHAKSPRIHT FIGTSPQHRA IPNLTMDEMA
DRIHETVTHA RNLCDNVQWS PMDATRTGWD YLARTVEIAI KAGATTINIP DTCGYTAPVE
SADLIRRLIA EVPGADEIIF ATHCHNDLGM ATANSLAAVD GGARQIECTI NGLGERAGNT
ALEEVVMAMK VRHDIMPYTS GIDTTKIMHL SRRVATVSGF NVQPNKAIVG KNAFAHESGI
HQDGMLKSAD TFEIMRPEDV GLSETNIVMG KHSGRAALRS KLKDLGYDMA DNQLNDLFVR
FKALADRKKE VFDDDLIALV TDAGSDGEGH LEVKFLRVIC GTEAPQSADL TLRVGDTDHQ
ATAQGDGPVD AAFNAVKAVF PNEAALQLYQ VSAVTEGMDA QATVTVRVEE GGRIATGQSA
DTDTVVASVK AYVNALNRLI VRREKTGGDV REVSYKDVG
|
|---|
| |