| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3628 |
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| Symbol | |
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| ID | 3936106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3701550 |
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| End bp | 3703487 |
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| Gene Length | 1938 bp |
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| Protein Length | 645 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637906004 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_511570 |
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| Protein GI | 89056119 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.11345 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGTCACTT CGCAGGCCTG GGCGATGCAT GCATTGGCCA TTAACGGTGT GGCAGCCTTC
GTCGTGATGG AGGTTACGCT CGCGATCCTG CTTTTGCTCA CCCTCGCGGT CCTTTGGGTC
AAGGTCCATG TGTCGAAATC CGCGAAGGAG GCGTTGGAGG AGGTTGAAAG AACCCTCAAT
GATGTCTCCG CCCAGGAAGC GATCATGCGT GCCGTCGTCC AGCACGCCAG CGACGGCTTG
GTCTATCTGG ATATGAGCGC ACGGATCTTG TGGGCCAATC CGGCCTACTG CCGCACCATG
GGGCGCACTC TGGAAGACAT GCGGGGTCGC CGCCCGCAGG AATTTTGCTT CCCGCCCGAA
TTGAAACCAA GCGATGATGA CATCGAGAAC TTTGCTTTCG ATCTTGAAGA TGAGGAGTTT
CAGACGCTGA CCCGCCGTCT CAATGTCCGC AAGAACGGCG AACGGTTCTG GCACGAATTC
AACCTTTCCG TCTTTGAAAC GCAGGAGGGG GAGGAATACG TCATCCTTGC CACCCGTGAC
GTGTCGCCTC AGGTGGCGCG CGAGGAAGAG CTGAAAGAAG CGCAATCCTA TCTGTTTCAT
GCCGCCCACC ACGACGCGCT GACCGCGCTC AACAATCGTG CGGCCTTCCT GACCGAAACC
GATGCCATCC TGACCACGGA TGACGAAGAG ACGCGTCAAC TTGGCCTGAT CTACATCGAC
CTTGACCACT TCAAAGCTGT CAACGACAGC AATGGTCATG CGGCCGGCGA TCAGTTGTTG
GTCCATGTGG CCGATGCCAT GCGCGACACG GCCCGTGAGC AAGACCTTTT GTGTCGCATG
GGGGGCGACG AGTTTGTGAT GGCGTGCCCC GGCGTGGCGA GTTTCGACGA ACTGCAACAC
ATCGCCGATG CGCTCCTGGA CCGGATTCGC ACGCCGATCC ACTGGGCGGA TCTGACCCTT
GTTTGCGGTG CGTCCATTGG CATCGCGCTC AGCAATGGAG AGCGGATGAC GGCGGAGGAT
CTGATCCGCT CCGCCGACTT CGCGCTGTAC GAGGCCAAGA CCCCCGGTGC GCCGCGCATC
GCCCGATACG ACGCCGTCCT GCACGAACGC CAAGTCGAGG AAAACGCGCT GATGGAGGAA
TTTGTCGAGA CGCTCGACAA TGACGGTATC CGCTTCATGT TTCAGCCGAT CATGGACGGA
CGGACCGGCA AAATCCGCTC GTTCGAGACC TTGGCACGAT GGCGCCGTAA AACCGGTGAG
GTCATCGCCC CCGACCAGTT CCTGCCCTAC GCCGCGCGTC TCAACCGAAT GGCGGACATC
GACTTTGCCG CCATCCGCGC GACGACCGCG TTGGTGTCCG ACCTGCAATC CGACGGGTAC
GACGTTCGCG GCGCGTTCAA TACGTCGTCC GAGGCTCTCG CGCATCCCGG CTTCATGGAT
CGGCTGGAGT TCGAGGCCCG GGAGGCGGGT CTGGACACGC AATCGCTGGT GGCCGAGGTG
CTGGAAACGA CGTTTTTTGG CGCCGATACC ACGGACAACG CCGCCGCTGC CCGCATTGTA
GAACTGCGGG AAAAAGGCTT CGCTGTGTAC CTTGATGATT TCGGTGTCGG CTATGCGGGG
CTGTCGCATC TGGGCAAGCT GGACGTCAGC GGCGTCAAGC TCGACCGCTC CCTGATTGCC
AACGTCACCC ATGATCGCTC GGCCCGCATC ATCACAACGT CGATCCTGCG TCTGTGTGAC
GAACTTGGCG TGGGCACCCT GGCTGAAGGT ATCGAATCCG CTGAGCAGGC GGATTTTCTG
ATGCAGAACG GCTGCTACCG CCTGCAAGGC TTCGGCATTG CCCGTCCCAT GGACCGCAAT
GCCGTGATCT CGCTGATCGC TGACGGTTCG CCGATTACGA TCCCGTCCGA GCAGACTGCA
CTCGCCTGCG CCGGCTGA
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| Protein sequence | MVTSQAWAMH ALAINGVAAF VVMEVTLAIL LLLTLAVLWV KVHVSKSAKE ALEEVERTLN
DVSAQEAIMR AVVQHASDGL VYLDMSARIL WANPAYCRTM GRTLEDMRGR RPQEFCFPPE
LKPSDDDIEN FAFDLEDEEF QTLTRRLNVR KNGERFWHEF NLSVFETQEG EEYVILATRD
VSPQVAREEE LKEAQSYLFH AAHHDALTAL NNRAAFLTET DAILTTDDEE TRQLGLIYID
LDHFKAVNDS NGHAAGDQLL VHVADAMRDT AREQDLLCRM GGDEFVMACP GVASFDELQH
IADALLDRIR TPIHWADLTL VCGASIGIAL SNGERMTAED LIRSADFALY EAKTPGAPRI
ARYDAVLHER QVEENALMEE FVETLDNDGI RFMFQPIMDG RTGKIRSFET LARWRRKTGE
VIAPDQFLPY AARLNRMADI DFAAIRATTA LVSDLQSDGY DVRGAFNTSS EALAHPGFMD
RLEFEAREAG LDTQSLVAEV LETTFFGADT TDNAAAARIV ELREKGFAVY LDDFGVGYAG
LSHLGKLDVS GVKLDRSLIA NVTHDRSARI ITTSILRLCD ELGVGTLAEG IESAEQADFL
MQNGCYRLQG FGIARPMDRN AVISLIADGS PITIPSEQTA LACAG
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