Gene Jann_3584 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3584 
SymboltrpA 
ID3936059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3663309 
End bp3664100 
Gene Length792 bp 
Protein Length263 aa 
Translation table11 
GC content65% 
IMG OID637905959 
Producttryptophan synthase subunit alpha 
Protein accessionYP_511526 
Protein GI89056075 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0159] Tryptophan synthase alpha chain 
TIGRFAM ID[TIGR00262] tryptophan synthase, alpha subunit 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.421277 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCGTA TCGACGACAC TTTCGCGCGC CTGTCCGCAT CCGGCAAAAA GGCCTTCGTC 
TCCTACATCA TGGCGGGCGA TCCGGATTAC GCGACCTCGC TTGAGGTCAT GCGGGGTCTG
CCCGCTGCCG GCGTCGACAT CATCGAATTG GGGCTGCCAT TCACGGACCC GATGGCCGAC
GGCTCCACCA TCCAGCTGGC CGGGCAACGC GCCCTCGACG GTGGCATGAC ACTGGACAAG
ACGTTGCAGA TGGTCCGCGA TTTTCGCGCC GGGGACGACA CGACGCCGAT TGTGCTGATG
GGCTATTACA ACCCGATCTA TTCGCGCGGC GTGGACCGGT TCCTGACCGA CGCAAGGGAA
GCGGGCATTG ACGGGCTGAT CGTCGTCGAC CTGCCGCCCG AGGAAGATGA AGAGCTGTGC
ATTCCCGCCC AGGCCGCTGG TCTGAACTTC ATCCGGCTGG CCACGCCAAC CACCGACGAC
GCCCGCCTCC CGGCCGTGCT CAGCAACACG TCGGGGTTTC TCTACTATGT CTCCATCACC
GGCATCACTG GGGCCGCCGC GCCCCAGGCC GCTGACGTGG CCCCCGAAGT CGCTCGCATC
AAATCCGCCA CCGACATACC GGTGATCGTG GGCTTCGGCA TCACCACATC CGAGGCCGCC
CGGACCATCG CAGGTGTGGC CGATGGCTGC GTCGTCGGAT CAGCGATCGT GTCCAGGATC
GCAGAGGGCG AGCCCGTGGC CGATGTTCTG GCCTTCGTCA AAAGCCTCTC GGACGGGGCG
CACGCGGCCT GA
 
Protein sequence
MTRIDDTFAR LSASGKKAFV SYIMAGDPDY ATSLEVMRGL PAAGVDIIEL GLPFTDPMAD 
GSTIQLAGQR ALDGGMTLDK TLQMVRDFRA GDDTTPIVLM GYYNPIYSRG VDRFLTDARE
AGIDGLIVVD LPPEEDEELC IPAQAAGLNF IRLATPTTDD ARLPAVLSNT SGFLYYVSIT
GITGAAAPQA ADVAPEVARI KSATDIPVIV GFGITTSEAA RTIAGVADGC VVGSAIVSRI
AEGEPVADVL AFVKSLSDGA HAA