Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3584 |
Symbol | trpA |
ID | 3936059 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | + |
Start bp | 3663309 |
End bp | 3664100 |
Gene Length | 792 bp |
Protein Length | 263 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637905959 |
Product | tryptophan synthase subunit alpha |
Protein accession | YP_511526 |
Protein GI | 89056075 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0159] Tryptophan synthase alpha chain |
TIGRFAM ID | [TIGR00262] tryptophan synthase, alpha subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.421277 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCCGTA TCGACGACAC TTTCGCGCGC CTGTCCGCAT CCGGCAAAAA GGCCTTCGTC TCCTACATCA TGGCGGGCGA TCCGGATTAC GCGACCTCGC TTGAGGTCAT GCGGGGTCTG CCCGCTGCCG GCGTCGACAT CATCGAATTG GGGCTGCCAT TCACGGACCC GATGGCCGAC GGCTCCACCA TCCAGCTGGC CGGGCAACGC GCCCTCGACG GTGGCATGAC ACTGGACAAG ACGTTGCAGA TGGTCCGCGA TTTTCGCGCC GGGGACGACA CGACGCCGAT TGTGCTGATG GGCTATTACA ACCCGATCTA TTCGCGCGGC GTGGACCGGT TCCTGACCGA CGCAAGGGAA GCGGGCATTG ACGGGCTGAT CGTCGTCGAC CTGCCGCCCG AGGAAGATGA AGAGCTGTGC ATTCCCGCCC AGGCCGCTGG TCTGAACTTC ATCCGGCTGG CCACGCCAAC CACCGACGAC GCCCGCCTCC CGGCCGTGCT CAGCAACACG TCGGGGTTTC TCTACTATGT CTCCATCACC GGCATCACTG GGGCCGCCGC GCCCCAGGCC GCTGACGTGG CCCCCGAAGT CGCTCGCATC AAATCCGCCA CCGACATACC GGTGATCGTG GGCTTCGGCA TCACCACATC CGAGGCCGCC CGGACCATCG CAGGTGTGGC CGATGGCTGC GTCGTCGGAT CAGCGATCGT GTCCAGGATC GCAGAGGGCG AGCCCGTGGC CGATGTTCTG GCCTTCGTCA AAAGCCTCTC GGACGGGGCG CACGCGGCCT GA
|
Protein sequence | MTRIDDTFAR LSASGKKAFV SYIMAGDPDY ATSLEVMRGL PAAGVDIIEL GLPFTDPMAD GSTIQLAGQR ALDGGMTLDK TLQMVRDFRA GDDTTPIVLM GYYNPIYSRG VDRFLTDARE AGIDGLIVVD LPPEEDEELC IPAQAAGLNF IRLATPTTDD ARLPAVLSNT SGFLYYVSIT GITGAAAPQA ADVAPEVARI KSATDIPVIV GFGITTSEAA RTIAGVADGC VVGSAIVSRI AEGEPVADVL AFVKSLSDGA HAA
|
| |