| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3582 |
|---|
| Symbol | |
|---|
| ID | 3936057 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3660389 |
|---|
| End bp | 3661486 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 637905957 |
|---|
| Product | GTP-dependent nucleic acid-binding protein EngD |
|---|
| Protein accession | YP_511524 |
|---|
| Protein GI | 89056073 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0012] Predicted GTPase, probable translation factor |
|---|
| TIGRFAM ID | [TIGR00092] GTP-binding protein YchF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.216393 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTTTCA AAATGGGCAT CGTGGGCCTG CCGAATGTCG GCAAATCGAC CCTGTTCAAC
GCGCTGACCC GCACGGCGGC GGCACAGGCG GCGAACTTTC CGTTCTGCAC GATCGAACCG
AATGTGGGCG ATGTGGCGGT GCCGGATGCG CGCCTCGACA AGCTGGCCGC AATTGCTGCG
TCCAAGAGCG TGATCCCCAC CCGCATGACC TTTGTGGATA TTGCGGGGCT GGTGAAGGGG
GCATCGCAGG GCGAGGGTTT GGGCAATCAG TTTCTGGCCA ACATCCGCGA GACGGATGCC
ATCGCCCACG TGCTGCGCTG TTTTGAGGAC GGCGATGTCG TCCATGTCGA CGGCCGCGTG
GACCCGATTG CCGATGCCGA GACGATTGAG ACGGAGTTGA TGCTGGCCGA TCTGGAAAGC
ATCGAGAAGC GCATGGTCAA CCTCGTGCGC AAGGTGCGCG GCGGCGACAA GGAGGCGGTG
CAGCAGGAAC GTTTGTTGAA TGCGGCCAAG GCGGCGCTGG AAGATGGCAA GCCCGCGCGT
ACCGTGGATG TGGCGGGTGA AGACGCCAAG GCGTGGAAGA TGCTACAACT TCTGACGACC
AAGCCGATCC TTTATGTCTG TAATGTTGAG GAAGAGAATG CGGGATCTGG AAATGCGGAA
TCCGCCCGTG TGGCCGAAAT GGCGGCAGCC CAGGGCAATT CCCACGTCGT GATTTCCGCC
AAGATCGAGG AAGATATCAG CCAGCTTGAG TCCGACGATG CCGAGATGTT CCTGGAGGAA
CTGGGGCTGG AGGAGCCGGG GCTGGACCGC CTAATACGGG CAGGCTACGA GTTGCTGAAC
CTACAGACCT ATTTCACTGT CGGCCCGAAA GAGGCGCGCG CCTGGACGAT CAAGGAGGGC
ACGCTGGCCC CGGCAGCGGC GGGCGTGATC CACGGGGATT TCGAGGCCAA GTTCATTCGC
GCCGAGACGA TTGCCTATGG CGATTACGTG GAATTGGGTG GCGAAAACCC GGCCAAGGAC
GCGGGCAAGA TGCGCGCGGA AGGCAAGGCG TATGTCGTCA AGGATGGCGA CGTGCTGCAC
TTCCTGCACG GGGGCTGA
|
|---|
| Protein sequence | MGFKMGIVGL PNVGKSTLFN ALTRTAAAQA ANFPFCTIEP NVGDVAVPDA RLDKLAAIAA
SKSVIPTRMT FVDIAGLVKG ASQGEGLGNQ FLANIRETDA IAHVLRCFED GDVVHVDGRV
DPIADAETIE TELMLADLES IEKRMVNLVR KVRGGDKEAV QQERLLNAAK AALEDGKPAR
TVDVAGEDAK AWKMLQLLTT KPILYVCNVE EENAGSGNAE SARVAEMAAA QGNSHVVISA
KIEEDISQLE SDDAEMFLEE LGLEEPGLDR LIRAGYELLN LQTYFTVGPK EARAWTIKEG
TLAPAAAGVI HGDFEAKFIR AETIAYGDYV ELGGENPAKD AGKMRAEGKA YVVKDGDVLH
FLHGG
|
|---|
| |