| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3565 |
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| Symbol | |
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| ID | 3936040 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3630251 |
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| End bp | 3630799 |
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| Gene Length | 549 bp |
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| Protein Length | 182 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637905940 |
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| Product | RNA polymerase sigma factor |
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| Protein accession | YP_511507 |
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| Protein GI | 89056056 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0489547 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCAATTG ATCCGCGCGA TGAGATCGTC GAGCACCTGC CATCCCTGCG CGCCTTTGCG
CGGTCGCTGA CCCGCAATCC GTCCTCTGCC GATGACCTCG TCCAAGACAC GGTGGTAAAG
GCCTGGTCGA ACATCGACAA ATTTCAGGCC GGCACGAACA TGCGCGCATG GCTGTTCACG
ATCCTGCGAA ACACCTTCTA TTCGGCCCGC CGCAAGCAAA AGCGCGAGGT CGCCGATATT
GACGGAGAGC TGACGGCACA ATTGTCAGAG AAACCAGCAC ATGACGGGCG TCTGGCGATG
AAGGATTTCG CCACGGCGTT CGCGGAGTTG CCAGACGAAC AGCGCGAGGC GTTGCTTCTC
GTCGGGGCAT CGGGGTTTGC GTATGAGGAA GCGGCCGACA TGTGTGGATG CGCTGTCGGC
ACGATCAAAA GTCGCGTCAA CCGGGCGCGG ACGCGACTGA CAGAAATGCT GGATCTGAAA
GAGGATGAAG CCCTTGAGCT GACGGATGCT GCAACGGTCG CCGTTGTCTC GGGGAAGCCT
GCCGCATGA
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| Protein sequence | MAIDPRDEIV EHLPSLRAFA RSLTRNPSSA DDLVQDTVVK AWSNIDKFQA GTNMRAWLFT
ILRNTFYSAR RKQKREVADI DGELTAQLSE KPAHDGRLAM KDFATAFAEL PDEQREALLL
VGASGFAYEE AADMCGCAVG TIKSRVNRAR TRLTEMLDLK EDEALELTDA ATVAVVSGKP
AA
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