| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3523 |
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| Symbol | |
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| ID | 3935998 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3580699 |
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| End bp | 3582783 |
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| Gene Length | 2085 bp |
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| Protein Length | 694 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637905898 |
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| Product | hypothetical protein |
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| Protein accession | YP_511465 |
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| Protein GI | 89056014 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3843] Type IV secretory pathway, VirD2 components (relaxase) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00323115 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCCGCA ATGAGAACGA TCTTCACATC CGCCCTGGCA AGGTCCGGGA CCGCGCCCCG
AGGGCTGAGC GCGTGGTGCG CCCGGCGCGG GGCTTCCTGG CCGATGTACA CAGGGCGATC
CGCCGGGCGG GTGGTGATCC GAACAAGTTG GCCGGGAGGG GTAAGGCGTC CGGACGGTAC
AACGCGCGCG GTCGCGGCGC GAAGGTCGTG GCAGAGTTGA AGGGCCGGAA CCAATGGAGC
CGGAGCGCCA ATGGGACCCG GACCCGCGCC CGGCGGGTGA CGGTGAAGGC GCGGATCGTG
AAGCTGAACC CGCAGCGCGG CGCGGCGCGC GGGAGGTCCT TTGTCAGCGC AAAGGCGGTT
GATGCGCATC TGCGGTATCT GCAGCGGGAC GGCGTCACGT TGGACGGCGA GAAGGGTCAG
GTTTACGCGA GAGACGATGA CATCGCGGAC GGCCGCGACT TCCTCGACCG GGGGCGCGGC
GATCGCCATC AGTTCCGGTT CATCGTTTCC GCCGAGGAAG GCGTGGAGCT TGACAACCTG
CGCCAGACGA CCCGCGATCT GATGGTCCAG ATGGAGGTTG ATCTGCAGAC GACGCTCGAT
TGGATCGCCG TCAATCACTA CAATACAGGG CATCCGCATA GCCACATTAT CGTCCGCGGG
GTGACCGATG ACGGGAAGAT CCTGAACATC GCGGGCGACT ACATTGCGCA CGGCATCCGC
GAGCGCGCCA GCGAGCTCGT GACCCTGGAA CTGGGCCGCC AGACCGACCT TCAAGTGACG
GATCAGTTGC GTCGCGAAGT GCACGCCGAG CGCTTCACCC GGCTCGACAA GATGCTGATG
GCCGAGCAGC GGATTAACAG CGCGTTCGCC GATTTGCGAC CGGACAAGGA CATGCTGGAG
ACGATGAAGC GCAACCGCGC GTTACTGATC GGGCGGGCGC AGTATCTCGA GAAGCTCGGG
CTGGCGCTGA AGATCGATCC GGGCGTCTGG CACTTGCGCG AGAATGCGGA ACCCGCTTTG
CGGGCCATGG GCGAACGGGG CGATATCCTC AAATCGATAT ATCGCGCGCT GGAGGCGAAC
GATCTGGAGG TGCAACGCGG GGAGGCGCAA CTCTCCATAC ACAGGGAAAC ACTGCAGAAC
CGGGTTGTCG GTCGCGTGCC CGCAAAGGCG CTTTCGACTG ACGAGTCCCG CGACCGGATG
CAGTTGGTCA TCGACGGAAC CGACGGCCAG GTGCATCAGA TCGAACTGCG TGCTGACAGA
TGCGAGGACG TCGGGCGCGG CATGATCGTG TCGGCGGCAC CGCCGTCGAC GGAGCCCCGC
GTGGCGGACC AAAACATCCT GGCGACGAGG GCGAGCGACG GGACGTATAG CCCGTCTCGG
CACATTGAGA TCGCTCGGGA GCGCAAGCTC AGCCCCGAAC CGGAGCGCTA TGTGGCATCC
CATGTTAGGC GGCTCGAAGC CCTGCGGAGG TCGGGAATCG TCGAGCGATG GGACGAGAAC
CATTGGTCGG TGCCGGAAGA CCTACCGAAA CAGGGACTGG CTTACGACCG CAAACGCCAC
GGTTCCGGCC CGCGCATGAC CGTCCTTTCA CCGATCAGTC TGGAGCGGCA GGTGACCCAC
GATGGCGCAA CCTGGCTCGA CCGGGAACTG GCGGAACAGC GGCAAGGATC GCTCCGGATG
GCGGGCTTCG GCGCAGAGGC AGACCAGGCG ATGAACCGCC GCAAGCGGGT GCTGGTGGAG
CGTGGTGATG CCATAGACCT CGGCAATGGT CGTATCCGCA CGCCGAAGGA CCTGATCCGG
CGTCTGGAGG GACGCGAGGT GGAGCGAGTC GGGCGCGCGA TGGCGGAAAA ACAGGGTCTT
CGCTGGCAAC CTGTAGAGCC CGGCAGTCAG TTCGATGGTC AACTAACCGG GAGCAGGCAA
CTGTCCAGCG GGCGCTTCGC CATGGTCGAT GACGGCTTGG GCTTCAGTCT TGTGCCATGG
AACGATGCGC TGGAGCAGCG CATCGGGCGG CAGGTGTCCG GTGTCGGGAT GCCCGGGGGC
GGCATCGATT GGACGTTCGA GAGGCAGCGG GGGTTGGGCC GATAG
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| Protein sequence | MTRNENDLHI RPGKVRDRAP RAERVVRPAR GFLADVHRAI RRAGGDPNKL AGRGKASGRY
NARGRGAKVV AELKGRNQWS RSANGTRTRA RRVTVKARIV KLNPQRGAAR GRSFVSAKAV
DAHLRYLQRD GVTLDGEKGQ VYARDDDIAD GRDFLDRGRG DRHQFRFIVS AEEGVELDNL
RQTTRDLMVQ MEVDLQTTLD WIAVNHYNTG HPHSHIIVRG VTDDGKILNI AGDYIAHGIR
ERASELVTLE LGRQTDLQVT DQLRREVHAE RFTRLDKMLM AEQRINSAFA DLRPDKDMLE
TMKRNRALLI GRAQYLEKLG LALKIDPGVW HLRENAEPAL RAMGERGDIL KSIYRALEAN
DLEVQRGEAQ LSIHRETLQN RVVGRVPAKA LSTDESRDRM QLVIDGTDGQ VHQIELRADR
CEDVGRGMIV SAAPPSTEPR VADQNILATR ASDGTYSPSR HIEIARERKL SPEPERYVAS
HVRRLEALRR SGIVERWDEN HWSVPEDLPK QGLAYDRKRH GSGPRMTVLS PISLERQVTH
DGATWLDREL AEQRQGSLRM AGFGAEADQA MNRRKRVLVE RGDAIDLGNG RIRTPKDLIR
RLEGREVERV GRAMAEKQGL RWQPVEPGSQ FDGQLTGSRQ LSSGRFAMVD DGLGFSLVPW
NDALEQRIGR QVSGVGMPGG GIDWTFERQR GLGR
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