| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3520 |
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| Symbol | |
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| ID | 3935994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3577241 |
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| End bp | 3578131 |
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| Gene Length | 891 bp |
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| Protein Length | 296 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637905894 |
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| Product | rarD protein |
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| Protein accession | YP_511462 |
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| Protein GI | 89056011 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG2962] Predicted permeases |
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| TIGRFAM ID | [TIGR00688] rarD protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.00194559 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGCACAGC CTCAACACGA CGACACACCC GCAGGTTATG CCTATGCGGT CAGCGCCTAT
GTGCTTTGGG GCGGGTTGCC GATCTACCTC AAGGCCTTGT CTCATATCCC GGCCCCTGAA
ATCGTCGCCC ATCGCGTGAT CTGGTCGCTG CCGATCATTG GCTTGCTGAT CTGGATCACT
GGCCGCACGG CGGACCTGAA GGTTGCGCTG CGCAGCCCAC GATTGCTGGC TATGGCAGCG
GTCACGGCGC TCTTCATTTC GGTGAACTGG GGTGTCTACA TCTGGGCCAT TGCGAACGAC
CGTGCGTTGG ACGGGGCGCT CGGCTATTAC ATCAACCCGC TTTTCAGCGT CTTCCTTGGC
GCGGTCCTTC TGGGAGAGAG CCTGAGCCGT CTGCAATGGT CTGCCGTCGC GCTTGCGGCG
CTGGCGGTCA TCGTCCTGAC CGTTGAGGAA GGCCGCCTCC CCTGGGTGGC GCTGGCCCTG
ATGCTCAGCT GGGGCGGCTA CGCGTTCTGC AAACGCAAGC TGCCCATCGG CCCGAACCAA
GGCTTCTTTC TTGAGGTCGC AATACTCTGC GTGCCCGCCC TGGCTTATGT GGCGTGGCTG
GGGGCCACTG GCCAGGGCAG CTTCATGGCA GGCGTGCCCT GGGACAGCTG GCTTCTGCTG
GGATGCGGTT TGGTCACCGC CATCCCCCTG ATCCTCTACG TCAACGGTGC CAAACTCCTG
CGGCTCAGCA CCATCGGCAT CCTGCAATAC ATCGCACCGA CCCTGATATT CCTGGTGGCC
GTGTTCCTGT TCAACGAACC CTTCGGCACC GCACGCATGA TCGCGTTTCC AATGATCTGG
ATTGCTCTCA TCCTCTATTC CATCGCTCTG TTTCGCAGGT CCCGCGCCTA A
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| Protein sequence | MAQPQHDDTP AGYAYAVSAY VLWGGLPIYL KALSHIPAPE IVAHRVIWSL PIIGLLIWIT
GRTADLKVAL RSPRLLAMAA VTALFISVNW GVYIWAIAND RALDGALGYY INPLFSVFLG
AVLLGESLSR LQWSAVALAA LAVIVLTVEE GRLPWVALAL MLSWGGYAFC KRKLPIGPNQ
GFFLEVAILC VPALAYVAWL GATGQGSFMA GVPWDSWLLL GCGLVTAIPL ILYVNGAKLL
RLSTIGILQY IAPTLIFLVA VFLFNEPFGT ARMIAFPMIW IALILYSIAL FRRSRA
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