| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3509 |
|---|
| Symbol | |
|---|
| ID | 3935983 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | - |
|---|
| Start bp | 3565438 |
|---|
| End bp | 3565977 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637905883 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_511451 |
|---|
| Protein GI | 89056000 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00117042 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 3 |
|---|
| Fosmid unclonability p-value | 0.0000549427 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGTCACGCG TCAAAACTTT GCAGGCCTTG TTCAAGCGCT ACCGCCGCCC GGGGGACATT
GTCTTCGCCT GGGCCTTGCT GATTGTCTCC GTCTTCCTGC TGTCACAGCT TTGGGGTCAA
ACCACGTGGC GCAGCGGCAA CGCCCTGTTT GCACAACCAC GCTTCTGGCC CGGCGTGTCG
CTGGCGGGCA TGGCAATCTT CGCGGCGTTC CACCTTCTGG GCTCGGCCCT GTCGGAGCGG
ATTGAGGGGC GGTGGTCGGA AGTCTGGCTG TGGATATCCT CGCTGGAATA TGCGGGCTGG
TTTATCATCT ACGCGCTGGT CGTGCCCTAT ACCGGCTACC TTCCGACCAC CGTCGTCTTC
GCCGTCGCGT TGGCTCTGCG CGTTGGATAC CGGTCCGGCA AGTCGGTGTT GGCTGCTGCC
GCCTCCGCCG TTGTGATCGT CGTGCTGTTC CGGTCGCTCT TGCAAGTGCG TGTGCCCGCC
GGCGCGGTCT ACCAGTACCT GCCCGACGGC CTCCGTCAAT TCTTCCTCAT CTACCTCTGA
|
|---|
| Protein sequence | MSRVKTLQAL FKRYRRPGDI VFAWALLIVS VFLLSQLWGQ TTWRSGNALF AQPRFWPGVS
LAGMAIFAAF HLLGSALSER IEGRWSEVWL WISSLEYAGW FIIYALVVPY TGYLPTTVVF
AVALALRVGY RSGKSVLAAA ASAVVIVVLF RSLLQVRVPA GAVYQYLPDG LRQFFLIYL
|
|---|
| |