Gene Jann_3494 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagJann_3494 
Symbol 
ID3935968 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameJannaschia sp. CCS1 
KingdomBacteria 
Replicon accessionNC_007802 
Strand
Start bp3547922 
End bp3551329 
Gene Length3408 bp 
Protein Length1135 aa 
Translation table11 
GC content67% 
IMG OID637905868 
Productbifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 
Protein accessionYP_511436 
Protein GI89055985 
COG category[C] Energy production and conversion
[E] Amino acid transport and metabolism 
COG ID[COG0506] Proline dehydrogenase
[COG4230] Delta 1-pyrroline-5-carboxylate dehydrogenase 
TIGRFAM ID[TIGR01238] delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain) 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.0970438 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGATC TCTCGCATTT TCGCCAAGCC ATCGCCTCCG CCCATCTGGA GGATGACGCC 
CTCGCCCTCG ACCGTCTGCG CAGTGCCCAT GATATCGCTC CCCCGGTGCG CAAGGCCGCT
TCCACCCGCG CCGCGCGTCT GGTGGCCAGT ATCCGGGCAG AGGATCGTGG CGGGTTGATG
GAGGTGTTTC TGGCCGAATA CGGCCTGTCC ACCGCCGAGG GACTGGCGCT GATGCGACTG
GCCGAGGCGC TGTTGCGCGT GCCCGACGAC GCCACCGTAG ATGCCTTGAT CGAAGACAAG
ATCGTGCCCG CCCAATGGTC CGGACACCGG GGCAAGTCGA AATCCGGGTT GGTCAATGCC
TCCACCCTGG CGCTGATGCT GACGGGTCGG GTGTTGTCTG ATGAGGACGG CGCAGGCATC
GCGGGCACGT TGAAGGGCGC GGTCAAACGG TTGGGAGAGC CGGTGATCCG CAAAGCCACC
CGCCGCGCGA TGAAGGAGAT GGGCAACCAG TTCGTTCTGG GTCAGACCAT CGCGGAGGCC
ATGAAGCGGG GCCGGGACCG CGCCGCACAG GGCTACACCT ACAGCTATGA CATGTTGGGA
GAGGCGGCTG TGACAGCGGA CGAGGCGCGG ATATTCTACG CCTCCTACGC CGATTCCATC
GCCTATTTGG CGAAGCAGGC TACCCATGAT GATATCCGGC AGAACCCCGG CATCTCCGTC
AAACTCTCGG CCTTGCACCC GCGCTATGAG GAAGCGCAGC GCGACCGGGT CCTGTCGGAA
CTCGTGCCCC GCGTGCTGGA GCTGGCTCAG GCCGCCAAGG CCGCGCGCAT GGGCTTTAAC
ATCGACGCGG AAGAGGCCGA CCGCCTGGAC CTGTCGTTGG ATGTGATCGA GGCCGTTCTG
CGCGACGAGA GCCTTGCCGG GTGGGACGGC TTCGGCGTGG TCGTGCAGGC CTACGGCAAA
CGCTGCGCCC CTGTGATTGA CTGGCTCTAT GCGCTGGCGG AGATCCATGA CCGCCGCATC
ATGGTGCGTC TGGTGAAGGG CGCGTATTGG GACACGGAAA TCAAGCGCGC GCAGGTCGCG
GGGCTGCCCG GCTTTCCCGT CTACACCGCC AAGGCCGCGA CGGATGTCAG CTACCTCTGC
TGCGCCCGCC AGCTTCTGGA CCGCACCGAC CGCATCTACC CGCAATTCGC CACCCACAAC
GCCCACACCG TCGCCGCGAC CATCGAGATG GCCGAGGACC CGCTGGCGTT TGAGTTCCAG
CGCCTCCACG GCATGGGGGA AGCGCTGCAC GAACAGGTGC GTGCGGCCAA TATGACGCGC
TGCCAGATCT ATGCCCCCGT CGGCGCGCAT CGCGATCTGC TCGCCTACCT GGTGCGCCGC
CTGTTGGAGA ACGGGGCCAA TTCGTCGTTT GTGCACAAGA TCATGGATGA GGATACGCCA
CCCGAGGCTG TGGCCGAGGA CCCGTTCCTG ACCCTGTCCC ATCCCGCCAC CCCCGTGACG
CTGCCCGGTG ATCTCTACGC GCCCGAGCGT CCCAATTCCC ACGGCATCGA CCTGACTGAC
CCGGCCTCGC TGGCTGCGCT TGACGCGGCT CGCGCGCCGT TCCGCGAGGC GACATGGCAG
GCGGGTTGCG GCATGGGAGA AACGCAAGAG GTCCGCAATC CCGCCGACCC CTCTGATCTT
GTCGGGTACG TCACCCTTTC CACTGCGGGC GATGCGCAAA CCGCCATCGA AACGGCACAG
GCCTGGGACG CGGCGAACCG CACCGACGTT CTTAACCGTG CCGCCGATCT CTACGAAACC
CACGCGCCTG AGCTCTTTGC CCTGCTCGCA AGGGAGGCTG GAAAGACCCT CCCCGATTGT
GAAGCCGAAT TGCGCGAAGC CGTTGATTTT CTGCGCTACT ACGCGGCCCG CATTGACGAC
CTCACCGACC CCGCTTTGGG GCGTGTCACG TGCATCAGCC CCTGGAACTT CCCGCTGGCG
ATTTTCACCG GGCAGATCTC CGCCGCCCTG GCCGCGGGCA ACGCCGTGCT TGCCAAACCG
GCGGAGGCCA CGCCTCTGAT CGCCGCCCGC GCCGTGGCGC TTTTGCATGA GGCCGGTGTT
CCCAAAACCG CTCTCCAACT TCTGCCGGGG GAGGGGGGCA CGGTCGGTGC GGCGCTCACC
AGCGATCCGC GCATCGACGG CGTGGCCTTC ACCGGATCCA CCGCCACGGC GCAGGTGATC
CACCGGGCGA TGGCCTCGAA CCTTGCGCCT TCCGCGCCAT TGATTGCAGA GACGGGCGGC
CTCAATGCGA TGATCGTCGA CAGCACCGCC CTGCCGGAAC AGGCGGTGAA AGATGTCGTG
ATGTCCGCCT TCCGCTCTGC CGGGCAGCGC TGTTCTGCCC TGCGCTGCCT GTACGTGCAG
AAAGACATCG CGCCCGCCTT CCTCAAGGCG CTTTATGGCG CAATGGACGA GTTGTCCCTT
GGCGATGCCT GGCCCTTGGC CAACGACATT GGCCCTGTCA TCGATGCTCG TGCCCAGGCC
GGGATCGCCG CACATATCGC GACAGCCCGC GCTGACGGGC GCATCCTGCA TGAGGGCACT
GCGCCCGTTC TCGGCACGTT CATTGCGCCC ACCGCGATCC GCGTCACCTC CATCGCGGAT
ATGTCCGAGG AGATCTTCGG CCCGGTCCTC CACGTCGCCA CGTTCAAGTC CAGCGACCTG
GATCGCGTGA TCGATGACAT CAACGCCACG GGCTACGGCC TGACCTTCGG CATCCACTCG
CGCATCGATG ACCGGATCGC GGATGTGACG GGGCGGATCA TGGCAGGCAA CCTCTATGTG
AACCGCAACC AGATCGGGGC GATCGTGGGC AGCCAACCCT TTGGCGGGCA GGGACTTTCG
GGCACCGGTC CCAAAGCGGG TGGGCCGTCC TATGTGCCGC GCTTTTGCCG CACGCCCCTT
GGGGAGGGCA CGCCCGGCAC GCCTGCGGAT ATCGAAGGTG CGGCCCATGA CCTGCACGTG
GCCCTGCCCG CAGATCGCAC GCTGACAACA CAGGATCTGC CCGGCCCGAC GGGGGAAACC
AACCGCCTTA CCACGCATCC CCGGGGTCGC GTGCTCTGCC TTGGGCCCGG ATCCGCCGCC
GCCCGTGACC AGGCCAGTGC CGCCACGGCC ACGGGCTGTG CCCCGGTCCT CGCGCCCGAC
CTGCCCGCCG CCGCGCTCAC CGATTTGCGT GCCTTCGATG CGGTCATCTA CTGGGGGGAC
GATGCGGCGG CACGGGCCTA TCGCAAGGTG CTTGCGGACA GGGACGGCCC CATCCTGCCC
CTGATCATGG ACGCGGACCC AAAGCCGCGC CTGATCCTGG AACGGCATAC CTGCATCGAC
ACCACGGCGG CGGGCGGCAA TGCGGCGCTG CTGGCGGCTG TGGCTTAG
 
Protein sequence
MSDLSHFRQA IASAHLEDDA LALDRLRSAH DIAPPVRKAA STRAARLVAS IRAEDRGGLM 
EVFLAEYGLS TAEGLALMRL AEALLRVPDD ATVDALIEDK IVPAQWSGHR GKSKSGLVNA
STLALMLTGR VLSDEDGAGI AGTLKGAVKR LGEPVIRKAT RRAMKEMGNQ FVLGQTIAEA
MKRGRDRAAQ GYTYSYDMLG EAAVTADEAR IFYASYADSI AYLAKQATHD DIRQNPGISV
KLSALHPRYE EAQRDRVLSE LVPRVLELAQ AAKAARMGFN IDAEEADRLD LSLDVIEAVL
RDESLAGWDG FGVVVQAYGK RCAPVIDWLY ALAEIHDRRI MVRLVKGAYW DTEIKRAQVA
GLPGFPVYTA KAATDVSYLC CARQLLDRTD RIYPQFATHN AHTVAATIEM AEDPLAFEFQ
RLHGMGEALH EQVRAANMTR CQIYAPVGAH RDLLAYLVRR LLENGANSSF VHKIMDEDTP
PEAVAEDPFL TLSHPATPVT LPGDLYAPER PNSHGIDLTD PASLAALDAA RAPFREATWQ
AGCGMGETQE VRNPADPSDL VGYVTLSTAG DAQTAIETAQ AWDAANRTDV LNRAADLYET
HAPELFALLA REAGKTLPDC EAELREAVDF LRYYAARIDD LTDPALGRVT CISPWNFPLA
IFTGQISAAL AAGNAVLAKP AEATPLIAAR AVALLHEAGV PKTALQLLPG EGGTVGAALT
SDPRIDGVAF TGSTATAQVI HRAMASNLAP SAPLIAETGG LNAMIVDSTA LPEQAVKDVV
MSAFRSAGQR CSALRCLYVQ KDIAPAFLKA LYGAMDELSL GDAWPLANDI GPVIDARAQA
GIAAHIATAR ADGRILHEGT APVLGTFIAP TAIRVTSIAD MSEEIFGPVL HVATFKSSDL
DRVIDDINAT GYGLTFGIHS RIDDRIADVT GRIMAGNLYV NRNQIGAIVG SQPFGGQGLS
GTGPKAGGPS YVPRFCRTPL GEGTPGTPAD IEGAAHDLHV ALPADRTLTT QDLPGPTGET
NRLTTHPRGR VLCLGPGSAA ARDQASAATA TGCAPVLAPD LPAAALTDLR AFDAVIYWGD
DAAARAYRKV LADRDGPILP LIMDADPKPR LILERHTCID TTAAGGNAAL LAAVA