| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3447 |
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| Symbol | |
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| ID | 3935921 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3492199 |
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| End bp | 3495129 |
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| Gene Length | 2931 bp |
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| Protein Length | 976 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637905821 |
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| Product | sarcosine oxidase alpha subunit family protein |
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| Protein accession | YP_511389 |
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| Protein GI | 89055938 |
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| COG category | [E] Amino acid transport and metabolism
[O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0404] Glycine cleavage system T protein (aminomethyltransferase)
[COG0492] Thioredoxin reductase |
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| TIGRFAM ID | [TIGR01372] sarcosine oxidase, alpha subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.54882 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCTTG ATCACAAGGG CATCATCGAC CGCTCCGCCC CCGTCCGTTT CCATTTCAAC
GGCGCGCCCT ACAGCGGCTT CAAGGGGGAC ACCGTCGCCT CTGCCCTAAT GGCCAATGGG
GTAAAGCTGG TGGGTCGGTC CTTCAAGTAT CATCGCCCGC GCGGGGTCCT GACCGCCGGA
TCGGAGGAGC CGAACGCCCT GATACAGGTC GGCGAAGGCG ACGCGATGCT GCCCAATGTC
CGCGCCACGG TGCAGGAGGT TTTCGCGGGG CTGGAGACGG CGTCACAAAA CCACCTCGGG
CCGCTGGCCT ATGACCTGCT CAGCGTCAAC GATTTGTTCC CCAACTTCCT GAGCGCGGGC
TTTTATTACA AGACATTCAT GTGGCCCCGC TCCTTCTGGG AACGTGTCTA CGAGCCCGCA
ATCCGCCGCG CCGCCGGTCT GGGGCGGATG ACGGAAGGGG CATCGCCCGA CATCTCGGAG
CGCGCCTTCG CCTTCTGCGA CGTGCTGGTG ATCGGCGGCG GCCCCACCGG CCTCATGGCC
GCGCTCACCG CTGCAATGTC TGGCGCAGAC GTCATCCTGG TCGAGGAAAC CGCCGATCTG
GGCGGGCGAG TGTTATCCGA CGGAGAGGTC ATCGACGGTC TGCCGGCGGA CGTCTGGGTG
GGCGAAACCG TGCAAAAACT GCACGCCACG GGCCGCGTGC GGATCATGAC CCGCACCACG
GCGACGGGCG TCTATGACGG TCTGACCTTT GGGGCCGTGG AACGCGTGGG CAGCCATCTG
CCCCGCGCCG ATCATCTGCC GCAGGAATGC TTCTGGCGTA TCCGGGCCGG TCAGGCGGTG
TTGGCCGCGG GCGCGCTGGA ACGGCCCATC GCCTTCCCCA ACAACGACCG ACCCGGCATC
ATGATGGCCT CGGCCATCCG CACCTATATC AACCGCTATG GCGTGACACC CGGCGAGAAG
GTCGCGATCT TCGCCAGCAA CGACGACGCC CACAAAACCG CGCTTGACCT GCAGGACGCG
GGCGTTGACG TTGCCGCCGT CATCGACAGC CGCGAAGATG CACAAGCCAT GGGCGACTAT
CGTCTGTATA CCGGCGCGCA GGTCGTGGGC AGCAAGGGAC GTCAGGCCCT GCGCGAGATC
ACGGTTCAGC GCGGCAGTTC CACCTTCAAG GTGGAGGCCG ATTGTCTTGG TATCTCAGGC
GGTTGGAACC CTACCCTGCA CCTCACCTGC CATTTGGGCG CACGGCCCGT ATGGGATTCG
GGCATCCATG CTTTCGTGCC CAAAGAGGCC GCGATAGCGG GCTTGCGCCC CGCAGGGGCC
TGCGCCGGGA CATTTTCATC CGAAGGATGC ATCAAAGATG GCATCGCCGC CGCGGCAGCG
GCGCTGAAAG CGCTCGGGTT GCGCGTGCGA AAGCCCGATC TGCCGCAATC CGAGGGCGCC
GCAGGCGCCA CCGCCCCCCT TTGGAGCGTC AGCGCAAAAG GCCGCGCCTG GCTCGACTTC
GCCAATGACG TCACCACCAA GGACGTGAAA CAATCCGCCG CCGAGGGCTT CAAATCCGTC
GAACACATGA AGCGCTACAC CACGCAGGGC ATGGCACCCG ATCAGGGCAA ATCCTCCAAC
ATAGGCGCGC TTGCCGTCCT TGCTGACGCG ACCGGCAAGG GCATTCCAGA GACCGGCACC
ACCACCTATC GCCCGCCCTT CACGCCCGTG GCGCTCGGCA CCCTGGCCGC CGGGGCGCAG
GGCAAGGGCT TCGCGCCGGA ACGCTTCACC ACCTCGGACA AGGCCGCCCG CCAGCGTGGC
GCGCCGATGA TCGCCGTGGG CCTCTGGTAT CGCGCCTCCT ACATGCCCCA GCCCGGCGAA
ACCCATTGGC GGCAATCCTG CGACCGGGAG GTCAACATGG TCCGCAATGC CGTGGGCGTG
GTCGACGTCT CCACCCTCGG CAAGATCGAG ATCTTCGGCG CGGATGCGGG CGCATTTCTC
GATTTCTTAT ATACGAACAC CTTCTCCACC CTCAAACCGG GCCGCGCGCG CTATGGTCTG
ATGCTGCGCG AAGACGGGCA TGTCATGGAT GACGGCACCA CCGCCTGCCT TGCCGACAAC
CACTACGTGA TGACCACCAC CACCGCCGCC GCCGGTCCGG TGATGGCGCA TATGGACTTC
GCGAGCCAGG TCCTGCGCCC GGATCTGGAT GTCGCCTTCA CGTCCGTGAC GGAACAATGG
GCGCAGTTCT CCGTCGCCGG TCCCCACGCC CGCACCCTGA TCAACGGCGT GCTCGACCAG
CCCATCGACG GTGACAGCTT TCCGTTCATG CAATGCGGCG CGGTCCGCGT TCACGGCGTC
CCCGGTCGCC TCTTCCGCAT CTCCTTCTCG GGCGAACATG CCTACGAGGT CGCCGTGCCC
GCGGCCTATG GCGACGCGCT CTACCGCGAC CTTGTGGCCC GCGCCGAGGC GTTGGGCGGC
GGCGCCTACG GGATGGAGGC GCTCAACGTG CTGCGGATCG AGAAGGGGTT CATCACCCAT
TCGGAGATCC ATGGCCGCGT CACCGCGTTC GATGTCGGCA TGCAGGGGAT GATGTCGAAA
AAGAAAGACT TCATCGGCAA GGCGGCGGCG ACACGTCCGG GCCTGTTGGA GGCGGATCGC
GAACGGCTCA TCGGCCTCAA ACCCACCGGG GCGGTGAAGG AGTTGACCGC AGGTGCGCAT
CTGTTCAACA CCGATGACGC TCCAACGCGG GAAAACGACC AGGGCTACGT CACCTCCGTC
GGCTATTCGC CCACCCTTGG CCATTTCGTC GGCCTTGGCT TCCTGCGTGA CGGGCCGAAC
CGCGTCGGGC ATCATATGAT GATGGTCGAC CACCTGCGGG GCGTCACGGC GGCGGTCGAA
ATCTGTGATC CGGTCTTCTT TGACCCCGAC GGAGGGCGCG CCCGTGGCTG A
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| Protein sequence | MRLDHKGIID RSAPVRFHFN GAPYSGFKGD TVASALMANG VKLVGRSFKY HRPRGVLTAG
SEEPNALIQV GEGDAMLPNV RATVQEVFAG LETASQNHLG PLAYDLLSVN DLFPNFLSAG
FYYKTFMWPR SFWERVYEPA IRRAAGLGRM TEGASPDISE RAFAFCDVLV IGGGPTGLMA
ALTAAMSGAD VILVEETADL GGRVLSDGEV IDGLPADVWV GETVQKLHAT GRVRIMTRTT
ATGVYDGLTF GAVERVGSHL PRADHLPQEC FWRIRAGQAV LAAGALERPI AFPNNDRPGI
MMASAIRTYI NRYGVTPGEK VAIFASNDDA HKTALDLQDA GVDVAAVIDS REDAQAMGDY
RLYTGAQVVG SKGRQALREI TVQRGSSTFK VEADCLGISG GWNPTLHLTC HLGARPVWDS
GIHAFVPKEA AIAGLRPAGA CAGTFSSEGC IKDGIAAAAA ALKALGLRVR KPDLPQSEGA
AGATAPLWSV SAKGRAWLDF ANDVTTKDVK QSAAEGFKSV EHMKRYTTQG MAPDQGKSSN
IGALAVLADA TGKGIPETGT TTYRPPFTPV ALGTLAAGAQ GKGFAPERFT TSDKAARQRG
APMIAVGLWY RASYMPQPGE THWRQSCDRE VNMVRNAVGV VDVSTLGKIE IFGADAGAFL
DFLYTNTFST LKPGRARYGL MLREDGHVMD DGTTACLADN HYVMTTTTAA AGPVMAHMDF
ASQVLRPDLD VAFTSVTEQW AQFSVAGPHA RTLINGVLDQ PIDGDSFPFM QCGAVRVHGV
PGRLFRISFS GEHAYEVAVP AAYGDALYRD LVARAEALGG GAYGMEALNV LRIEKGFITH
SEIHGRVTAF DVGMQGMMSK KKDFIGKAAA TRPGLLEADR ERLIGLKPTG AVKELTAGAH
LFNTDDAPTR ENDQGYVTSV GYSPTLGHFV GLGFLRDGPN RVGHHMMMVD HLRGVTAAVE
ICDPVFFDPD GGRARG
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