| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3418 |
|---|
| Symbol | |
|---|
| ID | 3935892 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Jannaschia sp. CCS1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007802 |
|---|
| Strand | + |
|---|
| Start bp | 3464740 |
|---|
| End bp | 3466029 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637905792 |
|---|
| Product | capsule polysaccharide biosynthesis |
|---|
| Protein accession | YP_511360 |
|---|
| Protein GI | 89055909 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3562] Capsule polysaccharide export protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0404344 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTCCAA ACCACGCCAA CCGCGCGTTT TTGTTTCTGC AAGGCCCCCA CGGGCCGTTC
TTCTCACGTC TGGCCGAGAT GGTGGCAAGC GCGGGCGCAC AGGTCTGGCG CGTGGGTTTC
AACCGCGGGG ATGAGGCGTT CTGGCCCGAC AAGGCCACCT ACCTGCCCTT CACAGCCCCG
GGCGAGACGT GGCCGGATCA TGTGGCGGGC CTTCTGGACA CCAAGGGGAT CACGGATCTG
GTCCTTTACG GCGACACCCG CCCGATCCAT GCCCAGGCCG TTGAACATGC CCGCGCGCGG
GGCATCACCG TTCATGTGTT CGAGGAAGGC TACCTGCGCC CCTATTGGGT GACGTATGAG
CGGGGCGGCG CCAATGGCCA TTCCCGCCTG ATGGAGACTT CCGTCCCGCA GATGCGCGCG
GCCCTCAAGG ACCTGGATCT GGACCTGCCC GATGCGCCCG CGAAATGGGG CGATATGCGC
CAGCACGTCT TCTACGGCGC GCTCTACCAT TGGTTCGTGA TGACCCGGAA CCGGCGCTAC
GCGTCCTTTC GCCCACACCG CACCCTGACT GTCGCCCAGG AATTCCGCCT CTATCTGCGT
CGTCTGGCGC TGATGCCGTT TTTGTGGCTC GACCGGGTGC TGGCCACCTA CCGGATCAAG
ACCGGCGGCT TTCCCTATCA TCTGGCACTT CTGCAACTGG CCCATGACGC CAGCTTCCGC
GACCATGGCC CATTTGAGGA TATGTCCGAG TTTCTCGACG TCCTGATCGC GGGCTTCGCG
GAGGGCGCGC CGTCCCACCA TCACCTTGTT TTCAAGGCTC ACCCGCTGGA AGATGGCCGC
ACGCCCGTCC GCGCCGATAT CCGCCGCATC GCCGCGCATC ACGGGGTCGC GGACCGGGTG
CATTATGTGC GGGGCGGCAA ACTCGCGCGC CTTCTGAACG ACGCGCGCTC GGCGGTGACG
GTGAACTCCA CCGCTGCGCA ACAGGCGCTC TGGCGCGGAC TTCCGCTCAA GGCGTTCGGG
CAGGCCGTGT ATCTCAAGCC GGAATTTGTC TCCGATCAGC CCCTGCCTGC CTTTTTCCAG
AACCCTACCC GCCCCGACAG CCGCGCCTAC CGCGACTACC GTCATTATCT GCTGGAAACC
TCCCAGATCT CGGGCAGCTT CTATTCCGCC CGGGGGCGCC TGCAATTGCT CCGCCAGGTG
GTCGACATGA TGCTCTCGTC CGAGGATGCC TATGATGCGC TTGACGCGGG CCGACCGGCA
CCAAGGCAAC ACCTTTCGCT GGTGAAATAA
|
|---|
| Protein sequence | MAPNHANRAF LFLQGPHGPF FSRLAEMVAS AGAQVWRVGF NRGDEAFWPD KATYLPFTAP
GETWPDHVAG LLDTKGITDL VLYGDTRPIH AQAVEHARAR GITVHVFEEG YLRPYWVTYE
RGGANGHSRL METSVPQMRA ALKDLDLDLP DAPAKWGDMR QHVFYGALYH WFVMTRNRRY
ASFRPHRTLT VAQEFRLYLR RLALMPFLWL DRVLATYRIK TGGFPYHLAL LQLAHDASFR
DHGPFEDMSE FLDVLIAGFA EGAPSHHHLV FKAHPLEDGR TPVRADIRRI AAHHGVADRV
HYVRGGKLAR LLNDARSAVT VNSTAAQQAL WRGLPLKAFG QAVYLKPEFV SDQPLPAFFQ
NPTRPDSRAY RDYRHYLLET SQISGSFYSA RGRLQLLRQV VDMMLSSEDA YDALDAGRPA
PRQHLSLVK
|
|---|
| |