Gene Jann_3413 details

Gene Information

• Locus tag: Jann_3413
• Symbol: ribH
• ID: 3935887
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Jannaschia sp. CCS1
• Kingdom: Bacteria
• Replicon accession: NC_007802
• Strand: -
• Start bp: 3461328
• End bp: 3461864
• Gene Length: 537 bp
• Protein Length: 178 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637905787
• Product: 6,7-dimethyl-8-ribityllumazine synthase
• Protein accession: YP_511355
• Protein GI: 89055904
• COG category: [H] Coenzyme transport and metabolism
• COG ID: [COG0054] Riboflavin synthase beta-chain
• TIGRFAM ID: [TIGR00114] 6,7-dimethyl-8-ribityllumazine synthase

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 0.33282
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 17
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCTGGAC ATTCTGACAA CGATCTGGGG CTGCCGTCCT TTGACAAACC GGTGAAGGTG 
GCGATTGTGA TCGCGCCTTA TTACACGAGC ATTTCGGAGG CGCAGCTTGC AGCGGCGCGC 
GGGGTGCTGG ATGCAGCAGA CGTGGCCCAC GAGACGATTG AGGTGCCCGG ATCGCTGGAA 
GTACCCACGG CCATCGGCAT CGCCCACAGG ATGAGCAATT TTGATGGGTT CGTCGCCCTG 
GGCTGCGTGA TCCGGGGCGC GACATCGCAT TATGACGTGG TGGTGAATGA AAGCAGCCGC 
GCCCTGACGA TGCTGGGGTT GCAGGGCATC TGCATCGGCA ATGGCATCAT CACGGTGGAG 
ACCCGGGATC AGGCGGAAGA ACGCGCGGAT GGCGGGCGGC TGAACACTGC GGGCGGCGCG 
GCGGAGGCGG CGTTGCACCT GATCGCGTTG ACGCGGAGCT ATGGCGCGCC TAAGGGGGCC 
CTCGGGTTCA AACCCCGCGG AACAATCGAG ATTGCAGACG GATCTTCCCA GGCATGA 

 

Protein sequence

MAGHSDNDLG LPSFDKPVKV AIVIAPYYTS ISEAQLAAAR GVLDAADVAH ETIEVPGSLE 
VPTAIGIAHR MSNFDGFVAL GCVIRGATSH YDVVVNESSR ALTMLGLQGI CIGNGIITVE 
TRDQAEERAD GGRLNTAGGA AEAALHLIAL TRSYGAPKGA LGFKPRGTIE IADGSSQA