| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3401 |
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| Symbol | |
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| ID | 3935874 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3452959 |
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| End bp | 3453891 |
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| Gene Length | 933 bp |
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| Protein Length | 310 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637905774 |
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| Product | ribosomal large subunit pseudouridine synthase D |
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| Protein accession | YP_511343 |
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| Protein GI | 89055892 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 21 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCAGTGG AAGAGGCGAT CAGCAGAACC CGGCTGGCGC GGCTGATCCC GGCGGGGGCC
GTGGCGATCA ACGGACGTGT CGTGACCGAC CCCAAGGCGC GCGTGGCCGA GGGCGACGGG
GTGGAGATCA CTGTGGAGGA CGCGGCGGAG GTCGAGACGG TGGCGGAGGA TATCCCGCTC
GACATCGTCC ACGAGGATGA CGACCTGATC GTCGTCAACA AACCGGCTGG CATGGTCGTG
CATCCGGCGC CGGGCTCGCC TTCGGGCACA TTGGTCAATG CGCTGCTGCA TCATTTCGGC
GGCAAGCTGT CTGGCGTGGG CGGAGAAAAG CGCCCCGGCA TCGTGCATCG GATCGACAAG
GACACCTCGG GTCTTCTGGT GGTGGCAAAG TCGGACCGCG CCCATCACGG GCTGGCCGCG
CAATTCGCGG ATCACTCGAT GGAGCGGGAA TATCTGGCGC TCTGCCACGG CGTGCCTGAC
GGGTCCGATC CGCGTCTGCG GGGGGTGAAA GGGGTCAGCT TTGAGGGATC GACCGTCAAG
ATCACCACGC AGCTTGCGCG CCACAAGACC GACCGCCAGC GGCAGGCGGT GCTCTTTTCC
GGTGGCCGCC ATGCCGTCAC CCGCGTGCGT GTGCTGGAGG CCCACGGGCC GGTCGCGCTG
GTCTCTTGCC GGCTGGAGAC GGGGCGCACC CATCAGATCC GGGTGCATAT GTCCCATGTC
GGCCACGCCC TGATCGGCGA TCAGACCTAT GGCGGGCGCA GAAAGATCAG CGCCAAGCTG
CCTGGCGCCG AGGCCGTGAA CGCATTCCCC CGCCAGGCGC TCCATGCCGC GACGCTGGGC
TTTGTGCATC CCGTGTCGCA GGATGTCATG CGGTTTGACG CCCCCCTGGC CCCGGATCTT
CGCATTTTAT TGACGGCGTT AACCCCCTCT TAA
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| Protein sequence | MPVEEAISRT RLARLIPAGA VAINGRVVTD PKARVAEGDG VEITVEDAAE VETVAEDIPL
DIVHEDDDLI VVNKPAGMVV HPAPGSPSGT LVNALLHHFG GKLSGVGGEK RPGIVHRIDK
DTSGLLVVAK SDRAHHGLAA QFADHSMERE YLALCHGVPD GSDPRLRGVK GVSFEGSTVK
ITTQLARHKT DRQRQAVLFS GGRHAVTRVR VLEAHGPVAL VSCRLETGRT HQIRVHMSHV
GHALIGDQTY GGRRKISAKL PGAEAVNAFP RQALHAATLG FVHPVSQDVM RFDAPLAPDL
RILLTALTPS
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