Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Jann_3400 |
Symbol | |
ID | 3935873 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Jannaschia sp. CCS1 |
Kingdom | Bacteria |
Replicon accession | NC_007802 |
Strand | - |
Start bp | 3451851 |
End bp | 3452747 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637905773 |
Product | RNA polymerase factor sigma-32 |
Protein accession | YP_511342 |
Protein GI | 89055891 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.874849 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCAATT ATGCAAATCT TCCCGCACCT TCGCCCGAGG GCGGCCTGAA CCGTTACCTG CAGGAAATCC GCAAGTTCCC GATGCTGGAG CCGGAGGAGG AGTACATGCT CGCCAAGGCC TGGGCCGAAA AGGAAGACAC CGAAGCCGCC CACAAGATGG TGACCTCGCA CCTGCGCCTC GCCGCCAAGA TCGCCATGGG CTATCGCGGC TATGGCCTGC CCCAGGCCGA AGTGATCTCG GAAGCCAATG TAGGCCTCAT GCAGGCCGTC AAGAAGTTTG ATCCCGAAAA GGGCTTCCGC CTGGCGACCT ATGCGATGTG GTGGATCCGG GCCGCGATCC AGGAATATGT CCTGCGCTCG TGGTCGATGG TGAAGCTCGG CACGACGTCT GCGCAAAAGA AGCTCTTCTT CAACCTGCGC AAGGCCAAGG CCCGCATCGG CGCGTTGGAG GAAGGCGACC TGCGCCCCGA AAACGTCGAA CGGATTGCCA ATGATCTGGG CGTGACGGAG GCGGAAGTCG TCTCCATGAA CCGGCGCATG TCGGGCGGTG ACGCGTCCCT GAACGCCACG GTCGGCTCCG AGGATGAAGG CTCTGCCCAA TGGCAGGACT GGCTGGAAGA TGAAGATGCC GATCAGGCGA CAGATTACGC CGAGCGGGAC GAATTCCAAA GCCGGATGGC CCTGATGGCC GAGGCGATGG AAGTGCTCAA TGACCGGGAG AAGGACATTC TGACCCAGCG CCGCCTGCAG GAGAAGGCCG TCACGTTGGA AGACCTCTCG GGCGTCTATA ATGTCAGCCG CGAGCGGGTC CGCCAGATCG AGGTGCGCGC GTTCGAGAAG CTGCAAAAGC GGATGCGGGA ATTGGCGCGC CAGCAAGGTA TGCTCGCTTC CGCCTAA
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Protein sequence | MANYANLPAP SPEGGLNRYL QEIRKFPMLE PEEEYMLAKA WAEKEDTEAA HKMVTSHLRL AAKIAMGYRG YGLPQAEVIS EANVGLMQAV KKFDPEKGFR LATYAMWWIR AAIQEYVLRS WSMVKLGTTS AQKKLFFNLR KAKARIGALE EGDLRPENVE RIANDLGVTE AEVVSMNRRM SGGDASLNAT VGSEDEGSAQ WQDWLEDEDA DQATDYAERD EFQSRMALMA EAMEVLNDRE KDILTQRRLQ EKAVTLEDLS GVYNVSRERV RQIEVRAFEK LQKRMRELAR QQGMLASA
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