| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3316 |
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| Symbol | |
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| ID | 3935789 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3370296 |
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| End bp | 3371681 |
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| Gene Length | 1386 bp |
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| Protein Length | 461 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637905689 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_511258 |
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| Protein GI | 89055807 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0101247 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.130845 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCAGTT TGAGCGGCAA CGAGATAAGG TTGAGCAGCA TGACCTCCGC ACCCCCCGCA
CCTGCGCCCT TCGCGCGGTT CGAATTCCTC ATCGCCTGGC GCTATCTGCG CGCGCGACGC
ACCGAAGGCG GCGTGTCGGC GATGACCTGG ATCAGCTTCA TCGGCATCGC GCTGGCCGTT
ATGGCCTTGA TCGCCGTGCT GGCCGTGCGG GCGGGGTTCC GGCACGAATT TGTCGGCACG
ATCCTGGGCG CGAACCCCCA TGTGGCGGTC TACGACATCG CGGAACTGAA CGATGCGGGT
CAGTTGGAGC GCGCGTTGGA GGGCTATGAC GCGGTGGCCG AGGCCGTGCG CGGCGTGAAT
GGCGTGACCC ATGCGGCGGC GGTGATCCGG GGTCAGGTGC TCAGCAGCTA TCGCGGGCGG
AATTCCGCCG TGGAGGTGAT CGGCATCACG CCCGAGGATC TGTCGAATGT GCCCCTGGTG
GCGGAGCCGG AGTGGCGGCA GGGCCTGCTG AGCGCGTTTG GCGCGCCCAC GGAAATCACG
CCGGAGGTCG ACGGCGCGTT CCCCATTCCG GGCGGGCCGG GCATCGCGAT CGGGTCCGGC
GTGGCGCGGG AATTGGGGGC CAGCGTGGGC GACCGGATCC GGCTGGTCAG CCCCGATGGC
GCACGCACGC CGTTCGGGAC GTCTCCGCGC GTCAGCACCT ATGAGGTCGT CTATATCTTT
CAGGTGGGCC GCTGGGACAT CGACCGCACG CGCGTCTACA TTCCCTTCGG CGAGGCGCAG
ACCTACTTCA ACCGCGACGG CGTGGCCGAT GAGGTGCAGG TGACGGTGGC CGAGCCGGAA
CAGATCGCGC AATATGTCCT GCCCCTGTTG CAGGCGGGCG GTGATGTGCA GATCTGGACG
TGGGAAGACA GCTCCGGCGC GTTCCTGACC GCGCTCCAGA TGGAGGACAA CATCATGTTC
ATCATCCTGT CGATCCTGGT GCTGATCGCG ACGATGAACA TCGTGTCGGG CCTGATCATG
CTGGTGAAAA ACAAGTCCCG CGATATCGGG ATTTTGCGCA CGATCGGGCT GAGTGAGGGG
AGCATTCTGC GGGTGTTCTT CATCTGCGGC TCGGCCATCG GGGTGGCGGG GACGCTGGCG
GGCGTGGCCC TGGGATGCGC GTTTGCGATC TGGATCGATC CGATCTTCAG CTTTGTGAAC
TATGTGGCAG GCGGCGGCGT TTGGGATCCG TCAGTGCGGA TGATCAGCGC GTTGCCCGCG
CGGTTGGAGG GCGCGGATGT GCTGACTGCG ATGGCCCTGT CGCTGGGGCT GAGCTTCGTG
GTGACGATCT TCCCGGCCCG GCGCGCGGCA CGGATGAACC CGGTGGAGGC GTTGCGGTAT
GAGTGA
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| Protein sequence | MASLSGNEIR LSSMTSAPPA PAPFARFEFL IAWRYLRARR TEGGVSAMTW ISFIGIALAV
MALIAVLAVR AGFRHEFVGT ILGANPHVAV YDIAELNDAG QLERALEGYD AVAEAVRGVN
GVTHAAAVIR GQVLSSYRGR NSAVEVIGIT PEDLSNVPLV AEPEWRQGLL SAFGAPTEIT
PEVDGAFPIP GGPGIAIGSG VARELGASVG DRIRLVSPDG ARTPFGTSPR VSTYEVVYIF
QVGRWDIDRT RVYIPFGEAQ TYFNRDGVAD EVQVTVAEPE QIAQYVLPLL QAGGDVQIWT
WEDSSGAFLT ALQMEDNIMF IILSILVLIA TMNIVSGLIM LVKNKSRDIG ILRTIGLSEG
SILRVFFICG SAIGVAGTLA GVALGCAFAI WIDPIFSFVN YVAGGGVWDP SVRMISALPA
RLEGADVLTA MALSLGLSFV VTIFPARRAA RMNPVEALRY E
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