| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3246 |
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| Symbol | |
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| ID | 3935718 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | - |
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| Start bp | 3296014 |
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| End bp | 3297309 |
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| Gene Length | 1296 bp |
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| Protein Length | 431 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637905618 |
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| Product | TRAP dicarboxylate transporter- DctM subunit |
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| Protein accession | YP_511188 |
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| Protein GI | 89055737 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.168842 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.109536 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACGAGC TGCTCCTCCT GTCGCTGTGC TTCGTGTTTC TCACGATCAT TGGCGTGCCA
CTGTTTGCCT CGGTCGGCCT GACAACCGCG CTGGCGCTCT TCCTGATCGA CATCCCCTAC
ACGCTGCTGG CCCAGACGGG CTATTCCAGC CTGACGCCCT TTCCGCTGCT GACCATTCCG
CTGTTCGTCC TCGCGGGCCG CCTGATGGAG GTCGGCGGCA TGGCCCAACG GATGATCGGC
ATCGCCACGA AATTGGTGGG CGCCTATCGC GGCTCAATGG GGTTGGTGAC GGTTTTCGCC
TGCATGCTCT TTGGTGCGTT GTCGGGCTCT GGTCCCGCGA CGACAGCGGC GATTGGATCG
GCCACGGTGC CCGCCATGAA AAAGGACGGC TATGACGTGC CGTTTGCCGC TGCCATCACT
GCGTCTGCGG GCGCTTTGGG CAGCCTGATC CCGCCGTCAA ACCTGATGAT TATCTATGGT
CTCGTGTCGG AAACCTCGAT CCCCCGGCTA TTCCTGGCCG GTGTCATCCC CGGCTTCCTT
GTCACGTTCC TGTTGATGGC CACCACCTAC ATGATCGCGC GCAGGCGCGG GTATGGGGGC
GGCGGTGATC CCTTCACCTG GGGTCCATTC CTGTCAGCGG CGTGGGAGGG CAAGTGGTCC
ATCGGCGCGC CCGTCCTGAT CCTGGGCGGG ATCTACGGCG GCATCTTCAC GCCCACCGAG
GCCGCAGGCG TCGCCGTCTT CTACGCGCTG TTTGTCGGGC TCTTCATTTA CCGCGAGCTG
AACCTGCGCA AATTGCTGGA GGCGCTGCGC TTCACTGCCT TGCTGACCGG CATCCTGATC
CTGCTGACGC CGACGCTGGC CTTCGGTCAA CTGACGGCCT TCTATGACGT GCCCACCGCC
GTGCAAGCCG GGATCACGTC GATCACCACC AGTCCCTTTC TGGTCCTGAT GCTGATTGCA
GTGTTCTACA TCTTCATCGG CACCTTCATG GAAAGCCTGG CGCAGATCGT GCTGTTCACC
GCGGTTTTCC TGCCGCTGGT CACGTCCCTC GGCATTGACC CGGTGCTGTT CGGCATCTTC
ACGGTGATCA CCTGTGAAAT CGGCTTCCTG ACCCCGCCCC TCGGCGCCAA CCTGACAATT
GCATCGCGCA TCTCAGGCAT CTCGCTGGAG CGGATTTCCG TCGCGGTGTT GCCCTTCATC
GGGGCCTATA TTGTGGGTCT GATCATCTTG ATCGTCTTCC CGGACCTCAC CCTGTTTCTG
CCCAATTGGG TCTATGGGCC CACCATCAGC CGATAG
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| Protein sequence | MNELLLLSLC FVFLTIIGVP LFASVGLTTA LALFLIDIPY TLLAQTGYSS LTPFPLLTIP
LFVLAGRLME VGGMAQRMIG IATKLVGAYR GSMGLVTVFA CMLFGALSGS GPATTAAIGS
ATVPAMKKDG YDVPFAAAIT ASAGALGSLI PPSNLMIIYG LVSETSIPRL FLAGVIPGFL
VTFLLMATTY MIARRRGYGG GGDPFTWGPF LSAAWEGKWS IGAPVLILGG IYGGIFTPTE
AAGVAVFYAL FVGLFIYREL NLRKLLEALR FTALLTGILI LLTPTLAFGQ LTAFYDVPTA
VQAGITSITT SPFLVLMLIA VFYIFIGTFM ESLAQIVLFT AVFLPLVTSL GIDPVLFGIF
TVITCEIGFL TPPLGANLTI ASRISGISLE RISVAVLPFI GAYIVGLIIL IVFPDLTLFL
PNWVYGPTIS R
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