| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Jann_3219 |
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| Symbol | |
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| ID | 3935691 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Jannaschia sp. CCS1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007802 |
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| Strand | + |
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| Start bp | 3264319 |
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| End bp | 3265983 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 637905591 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_511161 |
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| Protein GI | 89055710 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.267477 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACCAAG GTGCCCACCT CCTCACCATC GACAAGTTGA TGCGCTGGGA ACACTTTTCA
GTCAAAGTTC GGCTCACCAA AAAAACTGGT GAGCCTGTCT GGGTTACGAT GACTTGGACG
CCACTAACGG ATCCAGAAAA CGGCAATCGC TGGTGGCTAT GCTCCTTGAT CGAGCTTCAA
CCTCATCCAG CTCAAAGTAA GAACGTACTC GATTTTAGAA ACCAGTCATC TGCCAACGAC
TTGGTGACGC AGTATACAGA ACAAGTCGCG CATTTAGAGA GCGAGAATAG ACGTCTGCGC
TCCATCGCCA AGGCTGTCAC ACGAGATTCC AACGAAGATC CGCTGACTGG CCTATCGAAC
CGGAGGCACT TCGAGGCAAA CGTAAGCGTT TGGATTGCCG CTTTGAGAAA TCGGGGTGCC
GCATTCGCGA TACTTTTTAT CGATTTGGAT CGCTTCAAGA CGATTAACGA CACGCTTGGT
CATGAAGCGG GTGATGGTTT GCTTGTTGCC GTCGCATCCA TGTTGAAACG GATTACCCAT
AGTTCGGATT TGGTCGCTCG GTTGGGGGGG GACGAGTTTG TCATTCTAAG GCCTCTTGGC
GAGAGCGCCC TCGAAATTAG CGGCTTAGCA GACGAAATCA TACGTGAGAT GTCCAAACCA
TTTGAATTTG ACGGAAAATC GGTTTCGTGT GGTGCCAGCG TCGGGGTGGC AATTGCAGAC
AAGGACGCCA GGAACCCCGA AGAAGTCGTC GGAGATGCAG ACACTGCGCT TTATCACGCC
AAGTCGACTG GCCGTGCACG TTGGTCTTTT TTTACAGCAG AGATGCGTGC TCAGTCCGTT
GCGACCAGAC ATCTGGCGAC AGAGCTGTTA GCTGCTTGCG AACGGAAAGA GTTCGTTCCC
TATTTCCAAC CGCTGGTTGA TGCGTCGACA GGTCGGATTA CGGGTGTTGA AGTCCTTGTC
AGATGGTCAC ATCCGACGAG GGGCCTGGTG CCGCCAACAG ATTTCTTAGA TGTCGCAGCA
CAAATGGGAA TCCTGGCTGA GATTGACACG ATCTTGTTTA GCCGCCTTCG CGAGGCGGTG
GCATATCTTG ATACAGCGCA TATAGAGGTC CCCAGGTTTG CGATCAACGT TTCTGCTGGT
CGACTGTCCG ATTCGGCACT CTTACATGAT ATCAACGTTT CAGGGATCGA TCCGAAACGA
CTGACTGTTG AGATACTTGA GTCAGTGTAC CTGGAGCGGA TCCATGATGC CACGAGTTGG
ACATTAGAGG AACTGCGCGA ACTCGGCGTC GAGGTTGCGG TAGATGATTT CGGAACCGGT
CACGCTTCAG TCCAAGGACT TCTTCAGATC AAACCTGACG TGCTAAAGAT TGATCGTCAG
TTCGTTCAAC CTGCCGCAGA AAGTGAACGT GCCCGAGCGT TGGTGAAGTC CCTCATAGGC
ATTGGGAAAA GTCTCGGATT GAAAGTGGTC GCTGAAGGGG TGGAAAATGA GGCCCAGGCA
CAGCTCGCTC GCGACTTGGG CTGTGACATT TTGCAGGGAT TTTACTTTGG AAAGCCGATG
GCGGAACCCG ACCTATTCAA AGTGCTGAAC GAAACGAACG GTTGCCTTTG GCGCCCGACC
TCGACAGTCC AACAATCAGA ACTATCAATA AACATACTGC CCTAG
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| Protein sequence | MDQGAHLLTI DKLMRWEHFS VKVRLTKKTG EPVWVTMTWT PLTDPENGNR WWLCSLIELQ
PHPAQSKNVL DFRNQSSAND LVTQYTEQVA HLESENRRLR SIAKAVTRDS NEDPLTGLSN
RRHFEANVSV WIAALRNRGA AFAILFIDLD RFKTINDTLG HEAGDGLLVA VASMLKRITH
SSDLVARLGG DEFVILRPLG ESALEISGLA DEIIREMSKP FEFDGKSVSC GASVGVAIAD
KDARNPEEVV GDADTALYHA KSTGRARWSF FTAEMRAQSV ATRHLATELL AACERKEFVP
YFQPLVDAST GRITGVEVLV RWSHPTRGLV PPTDFLDVAA QMGILAEIDT ILFSRLREAV
AYLDTAHIEV PRFAINVSAG RLSDSALLHD INVSGIDPKR LTVEILESVY LERIHDATSW
TLEELRELGV EVAVDDFGTG HASVQGLLQI KPDVLKIDRQ FVQPAAESER ARALVKSLIG
IGKSLGLKVV AEGVENEAQA QLARDLGCDI LQGFYFGKPM AEPDLFKVLN ETNGCLWRPT
STVQQSELSI NILP
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